| RVdb StrainID | CNP00017 | GenBank Accession | ON311177.1 |
| Species | RVC | Sequence Length | 7045 nt |
| Serotype | 13 Checked by RVdb | Serotype (GenBank) | 13 |
| Definition | Rhinovirus C strain C13_1 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | C13_1 | Sampling Date | 2021-01-28 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC008962 | 1A (VP4) | 562 | 762 | 0 | 0 | 201 | |
| SQC008963 | 1B (VP2) | 763 | 1554 | 0 | 0 | 792 | |
| SQC008964 | 1C (VP3) | 1555 | 2253 | 0 | 0 | 699 | |
| SQC008965 | 1D (VP1) | 2254 | 3069 | 0 | 0 | 816 | |
| SQC008966 | 2A (P2-A) | 3070 | 3492 | 0 | 0 | 423 | |
| SQC008967 | 2B (P2-B) | 3493 | 3789 | 0 | 0 | 297 | |
| SQC008968 | 2C (P2-C) | 3790 | 4764 | 0 | 0 | 975 | |
| SQC008969 | 3'UTR | 6991 | 0 | 0 | 1 | 55 | |
| SQC008970 | 3A (P3-A) | 4765 | 4992 | 0 | 0 | 228 | |
| SQC008971 | 3B (VPg) | 4993 | 5058 | 0 | 0 | 66 | |
| SQC008972 | 3D | 5608 | 6987 | 0 | 0 | 1380 | |
| SQC008973 | 5'UTR | 0 | 561 | 1 | 0 | 561 | |
| SQC008974 | CDS | 562 | 6990 | 0 | 0 | 6429 | |
| SQC008975 | protease 3C | 5059 | 5607 | 0 | 0 | 549 | |
| SQC008976 | VP4/2 | 562 | 992 | 0 | 0 | 431 | |
| SQC008977 | genome | 1 | 7045 | 1 | 1 | 7045 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017712 | CDS | 1 | 2142 | 0 | 0 | 2142 | |
| SPC017713 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017714 | 3D | 1683 | 2142 | 0 | 0 | 460 | |
| SPC017715 | 2C (P2-C) | 1077 | 1401 | 0 | 0 | 325 | |
| SPC017716 | 1D (VP1) | 562 | 836 | 0 | 0 | 275 | |
| SPC017717 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
| SPC017718 | 1C (VP3) | 332 | 561 | 0 | 0 | 230 | |
| SPC017719 | protease 3C | 1500 | 1682 | 0 | 0 | 183 | |
| SPC017720 | 2A (P2-A) | 837 | 977 | 0 | 0 | 141 | |
| SPC017721 | 2B (P2-B) | 978 | 1076 | 0 | 0 | 99 | |
| SPC017722 | 3A (P3-A) | 1402 | 1477 | 0 | 0 | 76 | |
| SPC017723 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017724 | 3B (VPg) | 1478 | 1499 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |