| RVdb StrainID | CNP00012 | GenBank Accession | ON311277.1 |
| Species | RVC | Sequence Length | 7069 nt |
| Serotype | 17 Checked by RVdb | Serotype (GenBank) | 17 |
| Definition | Rhinovirus C strain C17_2 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | C17_2 | Sampling Date | 2020-12-03 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC008947 | 1A (VP4) | 573 | 773 | 0 | 0 | 201 | |
| SQC008948 | 1B (VP2) | 774 | 1562 | 0 | 0 | 789 | |
| SQC008949 | 1C (VP3) | 1563 | 2276 | 0 | 0 | 714 | |
| SQC008950 | 1D (VP1) | 2277 | 3113 | 0 | 0 | 837 | |
| SQC008951 | 2A (P2-A) | 3114 | 3521 | 0 | 0 | 408 | |
| SQC008952 | 2B (P2-B) | 3522 | 3818 | 0 | 0 | 297 | |
| SQC008953 | 2C (P2-C) | 3819 | 4796 | 0 | 0 | 978 | |
| SQC008954 | 3A (P3-A) | 4797 | 5021 | 0 | 0 | 225 | |
| SQC008955 | 3B (VPg) | 5022 | 5087 | 0 | 0 | 66 | |
| SQC008956 | 3D | 5637 | 7016 | 0 | 0 | 1380 | |
| SQC008957 | 5'UTR | 0 | 572 | 1 | 0 | 572 | |
| SQC008958 | CDS | 573 | 7019 | 0 | 0 | 6447 | |
| SQC008959 | protease 3C | 5088 | 5636 | 0 | 0 | 549 | |
| SQC008960 | VP4/2 | 573 | 1003 | 0 | 0 | 431 | |
| SQC008961 | genome | 1 | 7069 | 1 | 1 | 7069 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017775 | CDS | 1 | 2148 | 0 | 0 | 2148 | |
| SPC017776 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017777 | 3D | 1689 | 2148 | 0 | 0 | 460 | |
| SPC017778 | 2C (P2-C) | 1083 | 1408 | 0 | 0 | 326 | |
| SPC017779 | 1D (VP1) | 567 | 841 | 0 | 0 | 275 | |
| SPC017780 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC017781 | 1C (VP3) | 331 | 566 | 0 | 0 | 236 | |
| SPC017782 | protease 3C | 1506 | 1688 | 0 | 0 | 183 | |
| SPC017783 | 2A (P2-A) | 842 | 983 | 0 | 0 | 142 | |
| SPC017784 | 2B (P2-B) | 984 | 1082 | 0 | 0 | 99 | |
| SPC017785 | 3A (P3-A) | 1409 | 1483 | 0 | 0 | 75 | |
| SPC017786 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017787 | 3B (VPg) | 1484 | 1505 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |