| RVdb StrainID | CNP00007 | GenBank Accession | ON729340.1 |
| Species | RVC | Sequence Length | 7041 nt |
| Serotype | 56 Checked by RVdb | Serotype (GenBank) | 56 |
| Definition | Rhinovirus C56 strain SC9730 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | SC9730 | Sampling Date | 2017 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 2094116 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC008933 | 1A (VP4) | 595 | 795 | 0 | 0 | 201 | |
| SQC008934 | 1B (VP2) | 796 | 1581 | 0 | 0 | 786 | |
| SQC008935 | 1C (VP3) | 1582 | 2299 | 0 | 0 | 718 | |
| SQC008936 | 1D (VP1) | 2300 | 3156 | 0 | 0 | 857 | |
| SQC008937 | 2A (P2-A) | 3157 | 3564 | 0 | 0 | 408 | |
| SQC008938 | 2B (P2-B) | 3565 | 3861 | 0 | 0 | 297 | |
| SQC008939 | 2C (P2-C) | 3862 | 4839 | 0 | 0 | 978 | |
| SQC008940 | 3A (P3-A) | 4840 | 5064 | 0 | 0 | 225 | |
| SQC008941 | 3B (VPg) | 5065 | 5130 | 0 | 0 | 66 | |
| SQC008942 | 3D | 5680 | 0 | 0 | 1 | 1362 | |
| SQC008943 | 5'UTR | 0 | 594 | 1 | 0 | 594 | |
| SQC008944 | CDS | 595 | 0 | 0 | 1 | 6447 | |
| SQC008945 | protease 3C | 5131 | 5679 | 0 | 0 | 549 | |
| SQC008946 | VP4/2 | 595 | 1025 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017839 | CDS | 1 | 2149 | 0 | 0 | 2149 | |
| SPC017840 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017841 | 3D | 1696 | 2149 | 0 | 1 | 454 | |
| SPC017842 | 2C (P2-C) | 1090 | 1415 | 0 | 0 | 326 | |
| SPC017843 | 1D (VP1) | 567 | 848 | 0 | 0 | 282 | |
| SPC017844 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC017845 | 1C (VP3) | 330 | 566 | 0 | 0 | 237 | |
| SPC017846 | protease 3C | 1513 | 1695 | 0 | 0 | 183 | |
| SPC017847 | 2A (P2-A) | 849 | 990 | 0 | 0 | 142 | |
| SPC017848 | 2B (P2-B) | 991 | 1089 | 0 | 0 | 99 | |
| SPC017849 | 3A (P3-A) | 1416 | 1490 | 0 | 0 | 75 | |
| SPC017850 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017851 | 3B (VPg) | 1491 | 1512 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |