| RVdb StrainID | CNM06050 | GenBank Accession | DQ875932.2 |
| Species | RVC | Sequence Length | 7072 nt |
| Serotype | 7 Checked by RVdb | Serotype (GenBank) | 7 |
| Definition | Rhinovirus C7 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | NY-074 | Sampling Date | -N/A- |
| Sampling Country | USA | Sampling location | New York |
| Isolation Source | nasopharyngeal swab | NCBI Taxon ID | 1219379 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC008562 | 1A (VP4) | 609 | 809 | 0 | 0 | 201 | |
| SQC008563 | 1B (VP2) | 810 | 1595 | 0 | 0 | 786 | |
| SQC008564 | 1C (VP3) | 1596 | 2294 | 0 | 0 | 699 | |
| SQC008565 | 1D (VP1) | 2295 | 3110 | 0 | 0 | 816 | |
| SQC008566 | 2A (P2-A) | 3111 | 3536 | 0 | 0 | 426 | |
| SQC008567 | 2B (P2-B) | 3537 | 3827 | 0 | 0 | 291 | |
| SQC008568 | 2C (P2-C) | 3828 | 4802 | 0 | 0 | 975 | |
| SQC008569 | 3'UTR | 7029 | 7072 | 0 | 0 | 44 | |
| SQC008570 | 3A (P3-A) | 4803 | 5030 | 0 | 0 | 228 | |
| SQC008571 | 3B (VPg) | 5031 | 5096 | 0 | 0 | 66 | |
| SQC008572 | 3D | 5646 | 7025 | 0 | 0 | 1380 | |
| SQC008573 | 5'UTR | 1 | 608 | 0 | 0 | 608 | |
| SQC008574 | CDS | 609 | 7028 | 0 | 0 | 6420 | |
| SQC008575 | protease 3C | 5097 | 5645 | 0 | 0 | 549 | |
| SQC008576 | VP4/2 | 609 | 1039 | 0 | 0 | 431 | |
| SQC008577 | genome | 1 | 7072 | 0 | 0 | 7072 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC000025 | CDS | 1 | 2139 | 0 | 0 | 2139 | |
| SPC000026 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC000027 | 3D | 1680 | 2139 | 0 | 0 | 460 | |
| SPC000028 | 2C (P2-C) | 1074 | 1398 | 0 | 0 | 325 | |
| SPC000029 | 1D (VP1) | 563 | 834 | 0 | 0 | 272 | |
| SPC000030 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC000031 | 1C (VP3) | 330 | 562 | 0 | 0 | 233 | |
| SPC000032 | protease 3C | 1497 | 1679 | 0 | 0 | 183 | |
| SPC000033 | 2A (P2-A) | 835 | 976 | 0 | 0 | 142 | |
| SPC000034 | 2B (P2-B) | 977 | 1073 | 0 | 0 | 97 | |
| SPC000035 | 3A (P3-A) | 1399 | 1474 | 0 | 0 | 76 | |
| SPC000036 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC000037 | 3B (VPg) | 1475 | 1496 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 17054069 | MassTag polymerase-chain-reaction detection of respiratory pathogens, including a new rhinovirus genotype, that caused influenza-like illness in New York State during 2004-2005. | 2006 | J Infect Dis | View More |