RVdb StrainID | CNM05940 | GenBank Accession | EU743924.1 |
Species | RVC | Sequence Length | 428 nt |
Serotype | -N/A- | Serotype (GenBank) | -N/A- |
Definition | Human rhinovirus C isolate HRV-CO-1300 VP4/2 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
Strain Name | HRV-CO-1300 | Sampling Date | from 2004-12 to 2005-07 |
Sampling Country | USA | Sampling location | Colorado |
Isolation Source | nasopharyngeal wash from patient | NCBI Taxon ID | 463676 |
Sequencing Technology | -N/A- | Assembly Method | -N/A- |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SQC008501 | 1A (VP4) | 27 | 227 | 0 | 0 | 201 | |
SQC008502 | CDS | 27 | 0 | 0 | 1 | 402 | |
SQC008503 | VP4/2 | 27 | 0 | 0 | 1 | 402 |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SPC000361 | CDS | 1 | 134 | 0 | 1 | 134 | |
SPC000362 | VP4/2 | 1 | 134 | 0 | 1 | 134 | |
SPC000363 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 |
PMID | Title | Publication Year | Journal | View in RVdb |
---|---|---|---|---|
18674964 | Multiplex MassTag-PCR for respiratory pathogens in pediatric nasopharyngeal washes negative by conventional diagnostic testing shows a high prevalence of viruses belonging to a newly recognized rhinovirus clade. | 2008 | J Clin Virol | View More |