| RVdb StrainID | CNM04950 | GenBank Accession | JF436925.1 |
| Species | RVC | Sequence Length | 6864 nt |
| Serotype | 35 Checked by RVdb | Serotype (GenBank) | 35 |
| Definition | Human rhinovirus C35 clone LRTI-metagenomic-1 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | -N/A- | Sampling Date | -N/A- |
| Sampling Country | Sweden | Sampling location | Stockholm |
| Isolation Source | nasopharyngeal aspirates | NCBI Taxon ID | 1077430 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC008031 | 1A (VP4) | 450 | 650 | 0 | 0 | 201 | |
| SQC008032 | 1B (VP2) | 651 | 1433 | 0 | 0 | 783 | |
| SQC008033 | 1C (VP3) | 1434 | 2141 | 0 | 0 | 708 | |
| SQC008034 | 1D (VP1) | 2142 | 2957 | 0 | 0 | 816 | |
| SQC008035 | 2A (P2-A) | 2958 | 3380 | 0 | 0 | 423 | |
| SQC008036 | 2B (P2-B) | 3381 | 3677 | 0 | 0 | 297 | |
| SQC008037 | 2C (P2-C) | 3678 | 4655 | 0 | 0 | 978 | |
| SQC008038 | 3A (P3-A) | 4656 | 4880 | 0 | 0 | 225 | |
| SQC008039 | 3B (VPg) | 4881 | 4946 | 0 | 0 | 66 | |
| SQC008040 | 3D | 5499 | 0 | 0 | 1 | 1366 | |
| SQC008041 | CDS | 450 | 0 | 0 | 1 | 6415 | |
| SQC008042 | protease 3C | 4947 | 5498 | 0 | 0 | 552 | |
| SQC008043 | VP4/2 | 450 | 884 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002377 | CDS | 1 | 2138 | 0 | 0 | 2138 | |
| SPC002378 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC002379 | 3D | 1684 | 2138 | 0 | 1 | 455 | |
| SPC002380 | 2C (P2-C) | 1077 | 1402 | 0 | 0 | 326 | |
| SPC002381 | 1D (VP1) | 565 | 836 | 0 | 0 | 272 | |
| SPC002382 | 1B (VP2) | 68 | 328 | 0 | 0 | 261 | |
| SPC002383 | 1C (VP3) | 329 | 564 | 0 | 0 | 236 | |
| SPC002384 | protease 3C | 1500 | 1683 | 0 | 0 | 184 | |
| SPC002385 | 2A (P2-A) | 837 | 977 | 0 | 0 | 141 | |
| SPC002386 | 2B (P2-B) | 978 | 1076 | 0 | 0 | 99 | |
| SPC002387 | 3A (P3-A) | 1403 | 1477 | 0 | 0 | 75 | |
| SPC002388 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC002389 | 3B (VPg) | 1478 | 1499 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 22355331 | Characterization of the viral microbiome in patients with severe lower respiratory tract infections, using metagenomic sequencing. | 2012 | PLoS One | View More |