| RVdb StrainID | CNM03835 | GenBank Accession | KP242035.1 |
| Species | RVC | Sequence Length | 6836 nt |
| Serotype | 12 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Rhinovirus C isolate HRV-HFMD02 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-HFMD02 | Sampling Date | 2012-07 |
| Sampling Country | Thailand | Sampling location | Bangkok and Khon Kaen province |
| Isolation Source | pooled fecal samples from HFMD pateints | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Sequencher v. 5 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC007403 | 1A (VP4) | 525 | 725 | 0 | 0 | 201 | |
| SQC007404 | 1B (VP2) | 726 | 1520 | 0 | 0 | 795 | |
| SQC007405 | 1C (VP3) | 1521 | 2237 | 0 | 0 | 717 | |
| SQC007406 | 1D (VP1) | 2238 | 3068 | 0 | 0 | 831 | |
| SQC007407 | 2A (P2-A) | 3069 | 3494 | 0 | 0 | 426 | |
| SQC007408 | 2B (P2-B) | 3495 | 3791 | 0 | 0 | 297 | |
| SQC007409 | 2C (P2-C) | 3792 | 4769 | 0 | 0 | 978 | |
| SQC007410 | 3A (P3-A) | 4770 | 4994 | 0 | 0 | 225 | |
| SQC007411 | 3B (VPg) | 4995 | 5060 | 0 | 0 | 66 | |
| SQC007412 | 3D | 5610 | 0 | 0 | 1 | 1227 | |
| SQC007413 | 5'UTR | 0 | 524 | 1 | 0 | 524 | |
| SQC007414 | CDS | 525 | 0 | 0 | 1 | 6312 | |
| SQC007415 | protease 3C | 5061 | 5609 | 0 | 0 | 549 | |
| SQC007416 | VP4/2 | 525 | 959 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC005007 | CDS | 1 | 2104 | 0 | 0 | 2104 | |
| SPC005008 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC005009 | 3D | 1696 | 2104 | 0 | 1 | 409 | |
| SPC005010 | 2C (P2-C) | 1090 | 1415 | 0 | 0 | 326 | |
| SPC005011 | 1D (VP1) | 570 | 848 | 0 | 0 | 279 | |
| SPC005012 | 1B (VP2) | 68 | 332 | 0 | 0 | 265 | |
| SPC005013 | 1C (VP3) | 333 | 569 | 0 | 0 | 237 | |
| SPC005014 | protease 3C | 1513 | 1695 | 0 | 0 | 183 | |
| SPC005015 | 2A (P2-A) | 849 | 990 | 0 | 0 | 142 | |
| SPC005016 | 2B (P2-B) | 991 | 1089 | 0 | 0 | 99 | |
| SPC005017 | 3A (P3-A) | 1416 | 1490 | 0 | 0 | 75 | |
| SPC005018 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC005019 | 3B (VPg) | 1491 | 1512 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 26288145 | The Fecal Virome of Children with Hand, Foot, and Mouth Disease that Tested PCR Negative for Pathogenic Enteroviruses. | 2015 | PLoS One | View More |