RVdb StrainID CNM03585 GenBank Accession KR997880.1
Species RVC Sequence Length 2231 nt
Serotype 46  Serotype (GenBank) 46
Definition Rhinovirus C isolate HRV-C46_ID987T_5UTR/VP3 polyprotein gene, partial cds GenBank Submission Date 2022-11-03
Strain Name HRV-C46_ID987T_5UTR/VP3 Sampling Date 2008-11-27
Sampling Country Tanzania Sampling location 1 urban and 1 rural hospital in Tanzania
Isolation Source nasopharynx NCBI Taxon ID 463676
Sequencing Technology Sanger dideoxy sequencing Assembly Method -N/A-

Download selected NT sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SQC007274 1A (VP4) 441 641 0 0 201
SQC007275 1B (VP2) 642 1427 0 0 786
SQC007276 1C (VP3) 1428 2135 0 0 708
SQC007277 5'UTR 1 440 0 0 440
SQC007278 CDS 441 0 0 1 1791
SQC007279 VP4/2 441 871 0 0 431
Download selected AA sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SPC005190 CDS 1 597 0 1 597
SPC005191 VP4/2 1 145 0 0 145
SPC005192 1B (VP2) 68 329 0 0 262
SPC005193 1C (VP3) 330 565 0 0 236
SPC005194 1A (VP4) 1 67 0 0 67
PMID Title Publication Year Journal View in RVdb
26670243 Molecular Epidemiology of Human Rhinoviruses and Enteroviruses Highlights Their Diversity in Sub-Saharan Africa. 2015 Viruses View More