RVdb StrainID | CNM03585 | GenBank Accession | KR997880.1 |
Species | RVC | Sequence Length | 2231 nt |
Serotype | 46 | Serotype (GenBank) | 46 |
Definition | Rhinovirus C isolate HRV-C46_ID987T_5UTR/VP3 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
Strain Name | HRV-C46_ID987T_5UTR/VP3 | Sampling Date | 2008-11-27 |
Sampling Country | Tanzania | Sampling location | 1 urban and 1 rural hospital in Tanzania |
Isolation Source | nasopharynx | NCBI Taxon ID | 463676 |
Sequencing Technology | Sanger dideoxy sequencing | Assembly Method | -N/A- |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SQC007274 | 1A (VP4) | 441 | 641 | 0 | 0 | 201 | |
SQC007275 | 1B (VP2) | 642 | 1427 | 0 | 0 | 786 | |
SQC007276 | 1C (VP3) | 1428 | 2135 | 0 | 0 | 708 | |
SQC007277 | 5'UTR | 1 | 440 | 0 | 0 | 440 | |
SQC007278 | CDS | 441 | 0 | 0 | 1 | 1791 | |
SQC007279 | VP4/2 | 441 | 871 | 0 | 0 | 431 |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SPC005190 | CDS | 1 | 597 | 0 | 1 | 597 | |
SPC005191 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
SPC005192 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
SPC005193 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
SPC005194 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 |
PMID | Title | Publication Year | Journal | View in RVdb |
---|---|---|---|---|
26670243 | Molecular Epidemiology of Human Rhinoviruses and Enteroviruses Highlights Their Diversity in Sub-Saharan Africa. | 2015 | Viruses | View More |