| RVdb StrainID | CNM03580 | GenBank Accession | KR997885.1 |
| Species | RVC | Sequence Length | 3124 nt |
| Serotype | 55 Checked by RVdb | Serotype (GenBank) | 55 |
| Definition | Rhinovirus C isolate HRV-C55_ID529T_5UTR/2A polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C55_ID529T_5UTR/2A | Sampling Date | 2008-07-03 |
| Sampling Country | Tanzania | Sampling location | 1 urban and 1 rural hospital in Tanzania |
| Isolation Source | nasopharynx | NCBI Taxon ID | 463676 |
| Sequencing Technology | Sanger dideoxy sequencing | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC007267 | 1A (VP4) | 447 | 647 | 0 | 0 | 201 | |
| SQC007268 | 1B (VP2) | 648 | 1433 | 0 | 0 | 786 | |
| SQC007269 | 1C (VP3) | 1434 | 2138 | 0 | 0 | 705 | |
| SQC007270 | 1D (VP1) | 2139 | 2954 | 0 | 0 | 816 | |
| SQC007271 | 5'UTR | 1 | 446 | 0 | 0 | 446 | |
| SQC007272 | CDS | 447 | 0 | 0 | 1 | 2678 | |
| SQC007273 | VP4/2 | 447 | 877 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC005214 | CDS | 1 | 892 | 0 | 1 | 892 | |
| SPC005215 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC005216 | 1D (VP1) | 565 | 839 | 0 | 0 | 275 | |
| SPC005217 | 1B (VP2) | 68 | 328 | 0 | 0 | 261 | |
| SPC005218 | 1C (VP3) | 329 | 564 | 0 | 0 | 236 | |
| SPC005219 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 26670243 | Molecular Epidemiology of Human Rhinoviruses and Enteroviruses Highlights Their Diversity in Sub-Saharan Africa. | 2015 | Viruses | View More |