| RVdb StrainID | CNM01875 | GenBank Accession | MH685698.1 |
| Species | RVC | Sequence Length | 6814 nt |
| Serotype | 11 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Rhinovirus C isolate E0-41 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | E0-41 | Sampling Date | 2013 |
| Sampling Country | Uganda | Sampling location | Tororo District Hospital |
| Isolation Source | nasopharynx | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC006291 | 1A (VP4) | 532 | 732 | 0 | 0 | 201 | |
| SQC006292 | 1B (VP2) | 733 | 1524 | 0 | 0 | 792 | |
| SQC006293 | 1C (VP3) | 1525 | 2238 | 0 | 0 | 714 | |
| SQC006294 | 1D (VP1) | 2239 | 3057 | 0 | 0 | 819 | |
| SQC006295 | 2A (P2-A) | 3058 | 3483 | 0 | 0 | 426 | |
| SQC006296 | 2B (P2-B) | 3484 | 3780 | 0 | 0 | 297 | |
| SQC006297 | 2C (P2-C) | 3781 | 4758 | 0 | 0 | 978 | |
| SQC006298 | 3A (P3-A) | 4759 | 4983 | 0 | 0 | 225 | |
| SQC006299 | 3B (VPg) | 4984 | 5049 | 0 | 0 | 66 | |
| SQC006300 | 3D | 5599 | 0 | 0 | 1 | 1216 | |
| SQC006301 | 5'UTR | 0 | 531 | 1 | 0 | 531 | |
| SQC006302 | CDS | 532 | 0 | 0 | 1 | 6283 | |
| SQC006303 | protease 3C | 5050 | 5598 | 0 | 0 | 549 | |
| SQC006304 | VP4/2 | 532 | 966 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC008401 | CDS | 1 | 2094 | 0 | 0 | 2094 | |
| SPC008402 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC008403 | 3D | 1690 | 2094 | 0 | 1 | 405 | |
| SPC008404 | 2C (P2-C) | 1084 | 1409 | 0 | 0 | 326 | |
| SPC008405 | 1D (VP1) | 570 | 842 | 0 | 0 | 273 | |
| SPC008406 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
| SPC008407 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPC008408 | protease 3C | 1507 | 1689 | 0 | 0 | 183 | |
| SPC008409 | 2A (P2-A) | 843 | 984 | 0 | 0 | 142 | |
| SPC008410 | 2B (P2-B) | 985 | 1083 | 0 | 0 | 99 | |
| SPC008411 | 3A (P3-A) | 1410 | 1484 | 0 | 0 | 75 | |
| SPC008412 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC008413 | 3B (VPg) | 1485 | 1506 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 31220115 | Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda. | 2019 | PLoS One | View More |