| RVdb StrainID | CNM01870 | GenBank Accession | MH685704.1 |
| Species | RVC | Sequence Length | 6472 nt |
| Serotype | 6 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Rhinovirus C isolate E0-9 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | E0-9 | Sampling Date | 2013 |
| Sampling Country | Uganda | Sampling location | Tororo District Hospital |
| Isolation Source | nasopharynx | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC006277 | 1A (VP4) | 481 | 681 | 0 | 0 | 201 | |
| SQC006278 | 1B (VP2) | 682 | 1467 | 0 | 0 | 786 | |
| SQC006279 | 1C (VP3) | 1468 | 2166 | 0 | 0 | 699 | |
| SQC006280 | 1D (VP1) | 2167 | 2991 | 0 | 0 | 825 | |
| SQC006281 | 2A (P2-A) | 2992 | 3414 | 0 | 0 | 423 | |
| SQC006282 | 2B (P2-B) | 3415 | 3708 | 0 | 0 | 294 | |
| SQC006283 | 2C (P2-C) | 3709 | 4683 | 0 | 0 | 975 | |
| SQC006284 | 3A (P3-A) | 4684 | 4911 | 0 | 0 | 228 | |
| SQC006285 | 3B (VPg) | 4912 | 4977 | 0 | 0 | 66 | |
| SQC006286 | 3D | 5527 | 0 | 0 | 1 | 946 | |
| SQC006287 | 5'UTR | 0 | 480 | 1 | 0 | 480 | |
| SQC006288 | CDS | 481 | 0 | 0 | 1 | 5992 | |
| SQC006289 | protease 3C | 4978 | 5526 | 0 | 0 | 549 | |
| SQC006290 | VP4/2 | 481 | 911 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC008427 | CDS | 1 | 1997 | 0 | 0 | 1997 | |
| SPC008428 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC008429 | 2C (P2-C) | 1077 | 1401 | 0 | 0 | 325 | |
| SPC008430 | 1D (VP1) | 560 | 837 | 0 | 0 | 278 | |
| SPC008431 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC008432 | 1C (VP3) | 330 | 559 | 0 | 0 | 230 | |
| SPC008433 | protease 3C | 1500 | 1682 | 0 | 0 | 183 | |
| SPC008434 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC008435 | 3A (P3-A) | 1402 | 1477 | 0 | 0 | 76 | |
| SPC008436 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC008437 | 3B (VPg) | 1478 | 1499 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 31220115 | Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda. | 2019 | PLoS One | View More |