| RVdb StrainID | CNM00135 | GenBank Accession | NC_009996.1 |
| Species | RVC | Sequence Length | 7099 nt |
| Serotype | 4 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus C, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | 24 | Sampling Date | -N/A- |
| Sampling Country | China | Sampling location | Hong Kong |
| Isolation Source | nasopharyngeal aspirates of patients | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC004820 | 1A (VP4) | 616 | 816 | 0 | 0 | 201 | |
| SQC004821 | 1B (VP2) | 817 | 1599 | 0 | 0 | 783 | |
| SQC004822 | 1C (VP3) | 1600 | 2304 | 0 | 0 | 705 | |
| SQC004823 | 1D (VP1) | 2305 | 3126 | 0 | 0 | 822 | |
| SQC004824 | 2A (P2-A) | 3127 | 3552 | 0 | 0 | 426 | |
| SQC004825 | 2B (P2-B) | 3553 | 3849 | 0 | 0 | 297 | |
| SQC004826 | 2C (P2-C) | 3850 | 4827 | 0 | 0 | 978 | |
| SQC004827 | 3'UTR | 7051 | 7098 | 0 | 0 | 48 | |
| SQC004828 | 3A (P3-A) | 4828 | 5052 | 0 | 0 | 225 | |
| SQC004829 | 3B (VPg) | 5053 | 5118 | 0 | 0 | 66 | |
| SQC004830 | 3D | 5668 | 7047 | 0 | 0 | 1380 | |
| SQC004831 | 5'UTR | 1 | 615 | 0 | 0 | 615 | |
| SQC004832 | CDS | 616 | 7050 | 0 | 0 | 6435 | |
| SQC004833 | protease 3C | 5119 | 5667 | 0 | 0 | 549 | |
| SQC004834 | VP4/2 | 616 | 1046 | 0 | 0 | 431 | |
| SQC004835 | genome | 1 | 7099 | 0 | 0 | 7099 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC019951 | CDS | 1 | 2144 | 0 | 0 | 2144 | |
| SPC019952 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC019953 | 3D | 1685 | 2144 | 0 | 0 | 460 | |
| SPC019954 | 2C (P2-C) | 1079 | 1404 | 0 | 0 | 326 | |
| SPC019955 | 1D (VP1) | 564 | 837 | 0 | 0 | 274 | |
| SPC019956 | 1B (VP2) | 68 | 328 | 0 | 0 | 261 | |
| SPC019957 | 1C (VP3) | 329 | 563 | 0 | 0 | 235 | |
| SPC019958 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC019959 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC019960 | 2B (P2-B) | 980 | 1078 | 0 | 0 | 99 | |
| SPC019961 | 3A (P3-A) | 1405 | 1479 | 0 | 0 | 75 | |
| SPC019962 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC019963 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 | |
| SPC020089 | VP4/2 | 1 | 78 | 1 | 0 | 78 | |
| SPC020090 | 1B (VP2) | 1 | 261 | 0 | 0 | 261 | |
| SPC020091 | 1C (VP3) | 1 | 235 | 0 | 0 | 235 | |
| SPC020103 | 1D (VP1) | 1 | 267 | 0 | 0 | 267 | |
| SPC020104 | 2A (P2-A) | 1 | 141 | 0 | 0 | 141 | |
| SPC020528 | 2B (P2-B) | 2 | 98 | 0 | 0 | 97 | |
| SPC020529 | 2C (P2-C) | 1 | 326 | 0 | 0 | 326 | |
| SPC020530 | 3A (P3-A) | 1 | 75 | 1 | 0 | 75 | |
| SPC020531 | 3B (VPg) | 1 | 21 | 0 | 0 | 21 | |
| SPC020532 | protease 3C | 1 | 183 | 0 | 0 | 183 | |
| SPC020533 | 3D | 1 | 459 | 0 | 0 | 459 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 17804649 | Clinical features and complete genome characterization of a distinct human rhinovirus (HRV) genetic cluster, probably representing a previously undetected HRV species, HRV-C, associated with acute respiratory illness in children. | 2007 | J Clin Microbiol | View More |