| RVdb StrainID | CNM00060 | GenBank Accession | OL961531.1 |
| Species | RVC | Sequence Length | 7059 nt |
| Serotype | 13 Checked by RVdb | Serotype (GenBank) | 13 |
| Definition | Rhinovirus C13 strain RvC13/USA/2021/LATCKD, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | RvC13/USA/2021/LATCKD | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 2777132 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC004614 | 1A (VP4) | 576 | 776 | 0 | 0 | 201 | |
| SQC004615 | 1B (VP2) | 777 | 1568 | 0 | 0 | 792 | |
| SQC004616 | 1C (VP3) | 1569 | 2267 | 0 | 0 | 699 | |
| SQC004617 | 1D (VP1) | 2268 | 3083 | 0 | 0 | 816 | |
| SQC004618 | 2A (P2-A) | 3084 | 3506 | 0 | 0 | 423 | |
| SQC004619 | 2B (P2-B) | 3507 | 3803 | 0 | 0 | 297 | |
| SQC004620 | 2C (P2-C) | 3804 | 4778 | 0 | 0 | 975 | |
| SQC004621 | 3'UTR | 7005 | 0 | 0 | 1 | 55 | |
| SQC004622 | 3A (P3-A) | 4779 | 5006 | 0 | 0 | 228 | |
| SQC004623 | 3B (VPg) | 5007 | 5072 | 0 | 0 | 66 | |
| SQC004624 | 3D | 5622 | 7001 | 0 | 0 | 1380 | |
| SQC004625 | 5'UTR | 0 | 575 | 1 | 0 | 575 | |
| SQC004626 | CDS | 576 | 7004 | 0 | 0 | 6429 | |
| SQC004627 | protease 3C | 5073 | 5621 | 0 | 0 | 549 | |
| SQC004628 | VP4/2 | 576 | 1006 | 0 | 0 | 431 | |
| SQC004629 | genome | 1 | 7059 | 1 | 1 | 7059 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC016107 | CDS | 1 | 2142 | 0 | 0 | 2142 | |
| SPC016108 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC016109 | 3D | 1683 | 2142 | 0 | 0 | 460 | |
| SPC016110 | 2C (P2-C) | 1077 | 1401 | 0 | 0 | 325 | |
| SPC016111 | 1D (VP1) | 562 | 836 | 0 | 0 | 275 | |
| SPC016112 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
| SPC016113 | 1C (VP3) | 332 | 561 | 0 | 0 | 230 | |
| SPC016114 | protease 3C | 1500 | 1682 | 0 | 0 | 183 | |
| SPC016115 | 2A (P2-A) | 837 | 977 | 0 | 0 | 141 | |
| SPC016116 | 2B (P2-B) | 978 | 1076 | 0 | 0 | 99 | |
| SPC016117 | 3A (P3-A) | 1402 | 1477 | 0 | 0 | 76 | |
| SPC016118 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC016119 | 3B (VPg) | 1478 | 1499 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |