| RVdb StrainID | CNM00050 | GenBank Accession | OM001437.1 |
| Species | RVC | Sequence Length | 7026 nt |
| Serotype | 36 Checked by RVdb | Serotype (GenBank) | 36 |
| Definition | Rhinovirus C36 strain RvC36/USA/2021/L4RCSQ, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | RvC36/USA/2021/L4RCSQ | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1418041 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC004582 | 1A (VP4) | 549 | 749 | 0 | 0 | 201 | |
| SQC004583 | 1B (VP2) | 750 | 1534 | 0 | 0 | 785 | |
| SQC004584 | 1C (VP3) | 1535 | 2243 | 0 | 0 | 709 | |
| SQC004585 | 1D (VP1) | 2244 | 3059 | 0 | 0 | 816 | |
| SQC004586 | 2A (P2-A) | 3060 | 3485 | 0 | 0 | 426 | |
| SQC004587 | 2B (P2-B) | 3486 | 3782 | 0 | 0 | 297 | |
| SQC004588 | 2C (P2-C) | 3783 | 4760 | 0 | 0 | 978 | |
| SQC004589 | 3'UTR | 6984 | 7026 | 0 | 0 | 43 | |
| SQC004590 | 3A (P3-A) | 4761 | 4985 | 0 | 0 | 225 | |
| SQC004591 | 3B (VPg) | 4986 | 5051 | 0 | 0 | 66 | |
| SQC004592 | 3D | 5601 | 6980 | 0 | 0 | 1380 | |
| SQC004593 | 5'UTR | 0 | 548 | 1 | 0 | 548 | |
| SQC004594 | CDS | 549 | 6983 | 0 | 0 | 6435 | |
| SQC004595 | protease 3C | 5052 | 5600 | 0 | 0 | 549 | |
| SQC004596 | VP4/2 | 549 | 978 | 0 | 0 | 430 | |
| SQC004597 | genome | 1 | 7026 | 1 | 0 | 7026 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC015991 | CDS | 1 | 2144 | 0 | 0 | 2144 | |
| SPC015992 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC015993 | 3D | 1685 | 2144 | 0 | 0 | 460 | |
| SPC015994 | 2C (P2-C) | 1079 | 1404 | 0 | 0 | 326 | |
| SPC015995 | 1D (VP1) | 566 | 837 | 0 | 0 | 272 | |
| SPC015996 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC015997 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPC015998 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC015999 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC016000 | 2B (P2-B) | 980 | 1078 | 0 | 0 | 99 | |
| SPC016001 | 3A (P3-A) | 1405 | 1479 | 0 | 0 | 75 | |
| SPC016002 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC016003 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |