| RVdb StrainID | CNM00045 | GenBank Accession | OM001465.1 |
| Species | RVC | Sequence Length | 7069 nt |
| Serotype | 11 Checked by RVdb | Serotype (GenBank) | 11 |
| Definition | Rhinovirus C11 strain RvC11/USA/2021/XB3862, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | RvC11/USA/2021/XB3862 | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1240004 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC004566 | 1A (VP4) | 578 | 778 | 0 | 0 | 201 | |
| SQC004567 | 1B (VP2) | 779 | 1570 | 0 | 0 | 792 | |
| SQC004568 | 1C (VP3) | 1571 | 2284 | 0 | 0 | 714 | |
| SQC004569 | 1D (VP1) | 2285 | 3103 | 0 | 0 | 819 | |
| SQC004570 | 2A (P2-A) | 3104 | 3529 | 0 | 0 | 426 | |
| SQC004571 | 2B (P2-B) | 3530 | 3826 | 0 | 0 | 297 | |
| SQC004572 | 2C (P2-C) | 3827 | 4804 | 0 | 0 | 978 | |
| SQC004573 | 3'UTR | 7028 | 0 | 0 | 1 | 40 | |
| SQC004574 | 3A (P3-A) | 4805 | 5029 | 0 | 0 | 225 | |
| SQC004575 | 3B (VPg) | 5030 | 5095 | 0 | 0 | 66 | |
| SQC004576 | 3D | 5645 | 7024 | 0 | 0 | 1380 | |
| SQC004577 | 5'UTR | 0 | 577 | 1 | 0 | 577 | |
| SQC004578 | CDS | 578 | 7027 | 0 | 0 | 6450 | |
| SQC004579 | protease 3C | 5096 | 5644 | 0 | 0 | 549 | |
| SQC004580 | VP4/2 | 578 | 1008 | 0 | 0 | 431 | |
| SQC004581 | genome | 1 | 7069 | 1 | 1 | 7069 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC016055 | CDS | 1 | 2149 | 0 | 0 | 2149 | |
| SPC016056 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC016057 | 3D | 1690 | 2149 | 0 | 0 | 460 | |
| SPC016058 | 2C (P2-C) | 1084 | 1409 | 0 | 0 | 326 | |
| SPC016059 | 1D (VP1) | 570 | 842 | 0 | 0 | 273 | |
| SPC016060 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
| SPC016061 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPC016062 | protease 3C | 1507 | 1689 | 0 | 0 | 183 | |
| SPC016063 | 2A (P2-A) | 843 | 984 | 0 | 0 | 142 | |
| SPC016064 | 2B (P2-B) | 985 | 1083 | 0 | 0 | 99 | |
| SPC016065 | 3A (P3-A) | 1410 | 1484 | 0 | 0 | 75 | |
| SPC016066 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC016067 | 3B (VPg) | 1485 | 1506 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |