| RVdb StrainID | CNM00040 | GenBank Accession | ON311154.1 |
| Species | RVC | Sequence Length | 6951 nt |
| Serotype | 48 Checked by RVdb | Serotype (GenBank) | 48 |
| Definition | Rhinovirus C strain C48_1 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | C48_1 | Sampling Date | 2020-04-02 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC004551 | 1A (VP4) | 512 | 712 | 0 | 0 | 201 | |
| SQC004552 | 1B (VP2) | 713 | 1498 | 0 | 0 | 786 | |
| SQC004553 | 1C (VP3) | 1499 | 2209 | 0 | 0 | 711 | |
| SQC004554 | 1D (VP1) | 2210 | 3025 | 0 | 0 | 816 | |
| SQC004555 | 2A (P2-A) | 3026 | 3451 | 0 | 0 | 426 | |
| SQC004556 | 2B (P2-B) | 3452 | 3748 | 0 | 0 | 297 | |
| SQC004557 | 2C (P2-C) | 3749 | 4726 | 0 | 0 | 978 | |
| SQC004558 | 3A (P3-A) | 4727 | 4951 | 0 | 0 | 225 | |
| SQC004559 | 3B (VPg) | 4952 | 5017 | 0 | 0 | 66 | |
| SQC004560 | 3D | 5567 | 6946 | 0 | 0 | 1380 | |
| SQC004561 | 5'UTR | 0 | 511 | 1 | 0 | 511 | |
| SQC004562 | CDS | 512 | 6949 | 0 | 0 | 6438 | |
| SQC004563 | protease 3C | 5018 | 5566 | 0 | 0 | 549 | |
| SQC004564 | VP4/2 | 512 | 942 | 0 | 0 | 431 | |
| SQC004565 | genome | 1 | 6951 | 1 | 1 | 6951 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017420 | CDS | 1 | 2145 | 0 | 0 | 2145 | |
| SPC017421 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017422 | 3D | 1686 | 2145 | 0 | 0 | 460 | |
| SPC017423 | 2C (P2-C) | 1080 | 1405 | 0 | 0 | 326 | |
| SPC017424 | 1D (VP1) | 567 | 838 | 0 | 0 | 272 | |
| SPC017425 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC017426 | 1C (VP3) | 330 | 566 | 0 | 0 | 237 | |
| SPC017427 | protease 3C | 1503 | 1685 | 0 | 0 | 183 | |
| SPC017428 | 2A (P2-A) | 839 | 980 | 0 | 0 | 142 | |
| SPC017429 | 2B (P2-B) | 981 | 1079 | 0 | 0 | 99 | |
| SPC017430 | 3A (P3-A) | 1406 | 1480 | 0 | 0 | 75 | |
| SPC017431 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017432 | 3B (VPg) | 1481 | 1502 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |