| RVdb StrainID | CNM00035 | GenBank Accession | ON311159.1 |
| Species | RVC | Sequence Length | 7024 nt |
| Serotype | 36 Corrected by RVdb | Serotype (GenBank) | 51 |
| Definition | Rhinovirus C51 strain C36_2 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | C36_2 | Sampling Date | 2021-01-06 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 2777131 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC004535 | 1A (VP4) | 547 | 747 | 0 | 0 | 201 | |
| SQC004536 | 1B (VP2) | 748 | 1532 | 0 | 0 | 785 | |
| SQC004537 | 1C (VP3) | 1533 | 2241 | 0 | 0 | 709 | |
| SQC004538 | 1D (VP1) | 2242 | 3057 | 0 | 0 | 816 | |
| SQC004539 | 2A (P2-A) | 3058 | 3483 | 0 | 0 | 426 | |
| SQC004540 | 2B (P2-B) | 3484 | 3780 | 0 | 0 | 297 | |
| SQC004541 | 2C (P2-C) | 3781 | 4758 | 0 | 0 | 978 | |
| SQC004542 | 3'UTR | 6982 | 7024 | 0 | 0 | 43 | |
| SQC004543 | 3A (P3-A) | 4759 | 4983 | 0 | 0 | 225 | |
| SQC004544 | 3B (VPg) | 4984 | 5049 | 0 | 0 | 66 | |
| SQC004545 | 3D | 5599 | 6978 | 0 | 0 | 1380 | |
| SQC004546 | 5'UTR | 0 | 546 | 1 | 0 | 546 | |
| SQC004547 | CDS | 547 | 6981 | 0 | 0 | 6435 | |
| SQC004548 | protease 3C | 5050 | 5598 | 0 | 0 | 549 | |
| SQC004549 | VP4/2 | 547 | 976 | 0 | 0 | 430 | |
| SQC004550 | genome | 1 | 7024 | 1 | 0 | 7024 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017484 | CDS | 1 | 2144 | 0 | 0 | 2144 | |
| SPC017485 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017486 | 3D | 1685 | 2144 | 0 | 0 | 460 | |
| SPC017487 | 2C (P2-C) | 1079 | 1404 | 0 | 0 | 326 | |
| SPC017488 | 1D (VP1) | 566 | 837 | 0 | 0 | 272 | |
| SPC017489 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC017490 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPC017491 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC017492 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC017493 | 2B (P2-B) | 980 | 1078 | 0 | 0 | 99 | |
| SPC017494 | 3A (P3-A) | 1405 | 1479 | 0 | 0 | 75 | |
| SPC017495 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017496 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |