| RVdb StrainID | CNM00030 | GenBank Accession | ON311164.1 |
| Species | RVC | Sequence Length | 6684 nt |
| Serotype | 27 Corrected by RVdb | Serotype (GenBank) | 11 |
| Definition | Rhinovirus C11 strain C27_1 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | C27_1 | Sampling Date | 2021-04-18 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1240004 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC004521 | 1A (VP4) | 203 | 403 | 0 | 0 | 201 | |
| SQC004522 | 1B (VP2) | 404 | 1195 | 0 | 0 | 792 | |
| SQC004523 | 1C (VP3) | 1196 | 1912 | 0 | 0 | 717 | |
| SQC004524 | 1D (VP1) | 1913 | 2725 | 0 | 0 | 813 | |
| SQC004525 | 2A (P2-A) | 2726 | 3151 | 0 | 0 | 426 | |
| SQC004526 | 2B (P2-B) | 3152 | 3448 | 0 | 0 | 297 | |
| SQC004527 | 2C (P2-C) | 3449 | 4426 | 0 | 0 | 978 | |
| SQC004528 | 3'UTR | 6650 | 0 | 0 | 1 | 35 | |
| SQC004529 | 3A (P3-A) | 4427 | 4651 | 0 | 0 | 225 | |
| SQC004530 | 3B (VPg) | 4652 | 4717 | 0 | 0 | 66 | |
| SQC004531 | 3D | 5267 | 6646 | 0 | 0 | 1380 | |
| SQC004532 | CDS | 203 | 6649 | 0 | 0 | 6447 | |
| SQC004533 | protease 3C | 4718 | 5266 | 0 | 0 | 549 | |
| SQC004534 | VP4/2 | 203 | 633 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017543 | CDS | 1 | 2148 | 0 | 0 | 2148 | |
| SPC017544 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017545 | 3D | 1689 | 2148 | 0 | 0 | 460 | |
| SPC017546 | 2C (P2-C) | 1083 | 1408 | 0 | 0 | 326 | |
| SPC017547 | 1D (VP1) | 571 | 841 | 0 | 0 | 271 | |
| SPC017548 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
| SPC017549 | 1C (VP3) | 332 | 570 | 0 | 0 | 239 | |
| SPC017550 | protease 3C | 1506 | 1688 | 0 | 0 | 183 | |
| SPC017551 | 2A (P2-A) | 842 | 983 | 0 | 0 | 142 | |
| SPC017552 | 2B (P2-B) | 984 | 1082 | 0 | 0 | 99 | |
| SPC017553 | 3A (P3-A) | 1409 | 1483 | 0 | 0 | 75 | |
| SPC017554 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017555 | 3B (VPg) | 1484 | 1505 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |