| RVdb StrainID | CNM00025 | GenBank Accession | ON311169.1 |
| Species | RVC | Sequence Length | 7034 nt |
| Serotype | 15 Checked by RVdb | Serotype (GenBank) | 15 |
| Definition | Rhinovirus C15 strain C15_6 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | C15_6 | Sampling Date | 2021-01-19 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1418033 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC004505 | 1A (VP4) | 534 | 734 | 0 | 0 | 201 | |
| SQC004506 | 1B (VP2) | 735 | 1529 | 0 | 0 | 795 | |
| SQC004507 | 1C (VP3) | 1530 | 2243 | 0 | 0 | 714 | |
| SQC004508 | 1D (VP1) | 2244 | 3071 | 0 | 0 | 828 | |
| SQC004509 | 2A (P2-A) | 3072 | 3497 | 0 | 0 | 426 | |
| SQC004510 | 2B (P2-B) | 3498 | 3794 | 0 | 0 | 297 | |
| SQC004511 | 2C (P2-C) | 3795 | 4772 | 0 | 0 | 978 | |
| SQC004512 | 3'UTR | 6996 | 0 | 0 | 1 | 39 | |
| SQC004513 | 3A (P3-A) | 4773 | 4997 | 0 | 0 | 225 | |
| SQC004514 | 3B (VPg) | 4998 | 5063 | 0 | 0 | 66 | |
| SQC004515 | 3D | 5613 | 6992 | 0 | 0 | 1380 | |
| SQC004516 | 5'UTR | 0 | 533 | 1 | 0 | 533 | |
| SQC004517 | CDS | 534 | 6995 | 0 | 0 | 6462 | |
| SQC004518 | protease 3C | 5064 | 5612 | 0 | 0 | 549 | |
| SQC004519 | VP4/2 | 534 | 964 | 0 | 0 | 431 | |
| SQC004520 | genome | 1 | 7034 | 1 | 1 | 7034 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017608 | CDS | 1 | 2153 | 0 | 0 | 2153 | |
| SPC017609 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017610 | 3D | 1694 | 2153 | 0 | 0 | 460 | |
| SPC017611 | 2C (P2-C) | 1088 | 1413 | 0 | 0 | 326 | |
| SPC017612 | 1D (VP1) | 568 | 846 | 0 | 0 | 279 | |
| SPC017613 | 1B (VP2) | 68 | 332 | 0 | 0 | 265 | |
| SPC017614 | 1C (VP3) | 333 | 567 | 0 | 0 | 235 | |
| SPC017615 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPC017616 | 2A (P2-A) | 847 | 988 | 0 | 0 | 142 | |
| SPC017617 | 2B (P2-B) | 989 | 1087 | 0 | 0 | 99 | |
| SPC017618 | 3A (P3-A) | 1414 | 1488 | 0 | 0 | 75 | |
| SPC017619 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017620 | 3B (VPg) | 1489 | 1510 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |