| RVdb StrainID | CNM00020 | GenBank Accession | ON311174.1 |
| Species | RVC | Sequence Length | 6950 nt |
| Serotype | 15 Checked by RVdb | Serotype (GenBank) | 15 |
| Definition | Rhinovirus C15 strain C15_1 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | C15_1 | Sampling Date | 2020-04-10 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1418033 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC004490 | 1A (VP4) | 473 | 673 | 0 | 0 | 201 | |
| SQC004491 | 1B (VP2) | 674 | 1468 | 0 | 0 | 795 | |
| SQC004492 | 1C (VP3) | 1469 | 2182 | 0 | 0 | 714 | |
| SQC004493 | 1D (VP1) | 2183 | 3010 | 0 | 0 | 828 | |
| SQC004494 | 2A (P2-A) | 3011 | 3436 | 0 | 0 | 426 | |
| SQC004495 | 2B (P2-B) | 3437 | 3733 | 0 | 0 | 297 | |
| SQC004496 | 2C (P2-C) | 3734 | 4711 | 0 | 0 | 978 | |
| SQC004497 | 3A (P3-A) | 4712 | 4936 | 0 | 0 | 225 | |
| SQC004498 | 3B (VPg) | 4937 | 5002 | 0 | 0 | 66 | |
| SQC004499 | 3D | 5552 | 6931 | 0 | 0 | 1380 | |
| SQC004500 | 5'UTR | 0 | 472 | 1 | 0 | 472 | |
| SQC004501 | CDS | 473 | 6934 | 0 | 0 | 6462 | |
| SQC004502 | protease 3C | 5003 | 5551 | 0 | 0 | 549 | |
| SQC004503 | VP4/2 | 473 | 893 | 0 | 0 | 421 | |
| SQC004504 | genome | 1 | 6950 | 1 | 1 | 6950 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017673 | CDS | 1 | 2153 | 0 | 0 | 2153 | |
| SPC017674 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017675 | 3D | 1694 | 2153 | 0 | 0 | 460 | |
| SPC017676 | 2C (P2-C) | 1088 | 1413 | 0 | 0 | 326 | |
| SPC017677 | 1D (VP1) | 568 | 846 | 0 | 0 | 279 | |
| SPC017678 | 1B (VP2) | 68 | 332 | 0 | 0 | 265 | |
| SPC017679 | 1C (VP3) | 333 | 567 | 0 | 0 | 235 | |
| SPC017680 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPC017681 | 2A (P2-A) | 847 | 988 | 0 | 0 | 142 | |
| SPC017682 | 2B (P2-B) | 989 | 1087 | 0 | 0 | 99 | |
| SPC017683 | 3A (P3-A) | 1414 | 1488 | 0 | 0 | 75 | |
| SPC017684 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017685 | 3B (VPg) | 1489 | 1510 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |