| RVdb StrainID | CNC06049 | GenBank Accession | EF077279.1 |
| Species | RVC | Sequence Length | 6944 nt |
| Serotype | 1 Checked by RVdb | Serotype (GenBank) | 1 |
| Definition | Rhinovirus C1 isolate NAT001 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | NAT001 | Sampling Date | 2001-11-15 |
| Sampling Country | USA | Sampling location | California, San Francisco |
| Isolation Source | nasal lavage fluid from an upper respiratory infection | NCBI Taxon ID | 1219416 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC004078 | 1A (VP4) | 479 | 685 | 0 | 0 | 207 | |
| SQC004079 | 1B (VP2) | 686 | 1470 | 0 | 0 | 785 | |
| SQC004080 | 1C (VP3) | 1471 | 2173 | 0 | 0 | 703 | |
| SQC004081 | 1D (VP1) | 2174 | 2989 | 0 | 0 | 816 | |
| SQC004082 | 2A (P2-A) | 2990 | 3415 | 0 | 0 | 426 | |
| SQC004083 | 2B (P2-B) | 3416 | 3706 | 0 | 0 | 291 | |
| SQC004084 | 2C (P2-C) | 3707 | 4681 | 0 | 0 | 975 | |
| SQC004085 | 3'UTR | 6908 | 0 | 0 | 1 | 37 | |
| SQC004086 | 3A (P3-A) | 4682 | 4909 | 0 | 0 | 228 | |
| SQC004087 | 3B (VPg) | 4910 | 4975 | 0 | 0 | 66 | |
| SQC004088 | 3D | 5525 | 6904 | 0 | 0 | 1380 | |
| SQC004089 | 5'UTR | 0 | 478 | 1 | 0 | 478 | |
| SQC004090 | CDS | 479 | 6907 | 0 | 0 | 6429 | |
| SQC004091 | protease 3C | 4976 | 5524 | 0 | 0 | 549 | |
| SQC004092 | VP4/2 | 479 | 909 | 0 | 0 | 431 | |
| SQC004093 | genome | 1 | 6944 | 1 | 1 | 6944 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC000153 | CDS | 1 | 2142 | 0 | 0 | 2142 | |
| SPC000154 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC000155 | 3D | 1683 | 2142 | 0 | 0 | 460 | |
| SPC000156 | 2C (P2-C) | 1077 | 1401 | 0 | 0 | 325 | |
| SPC000157 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
| SPC000158 | 1C (VP3) | 332 | 566 | 0 | 0 | 235 | |
| SPC000159 | protease 3C | 1500 | 1682 | 0 | 0 | 183 | |
| SPC000160 | 2A (P2-A) | 838 | 978 | 0 | 0 | 141 | |
| SPC000161 | 2B (P2-B) | 979 | 1076 | 0 | 0 | 98 | |
| SPC000162 | 3A (P3-A) | 1402 | 1477 | 0 | 0 | 76 | |
| SPC000163 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC000164 | 3B (VPg) | 1478 | 1499 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 17703411 | Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity. | 2007 | J Infect Dis | View More |