| RVdb StrainID | CNC05994 | GenBank Accession | EF582386.1 |
| Species | RVC | Sequence Length | 7114 nt |
| Serotype | 5 Checked by RVdb | Serotype (GenBank) | 5 |
| Definition | Rhinovirus C5, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | 25 | Sampling Date | -N/A- |
| Sampling Country | China | Sampling location | Hong Kong |
| Isolation Source | nasopharyngeal aspirates of patients | NCBI Taxon ID | 1418031 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC004045 | 1A (VP4) | 617 | 817 | 0 | 0 | 201 | |
| SQC004046 | 1B (VP2) | 818 | 1609 | 0 | 0 | 792 | |
| SQC004047 | 1C (VP3) | 1610 | 2326 | 0 | 0 | 717 | |
| SQC004048 | 1D (VP1) | 2327 | 3151 | 0 | 0 | 825 | |
| SQC004049 | 2A (P2-A) | 3152 | 3577 | 0 | 0 | 426 | |
| SQC004050 | 2B (P2-B) | 3578 | 3874 | 0 | 0 | 297 | |
| SQC004051 | 2C (P2-C) | 3875 | 4852 | 0 | 0 | 978 | |
| SQC004052 | 3'UTR | 7076 | 0 | 0 | 1 | 39 | |
| SQC004053 | 3A (P3-A) | 4853 | 5077 | 0 | 0 | 225 | |
| SQC004054 | 3B (VPg) | 5078 | 5143 | 0 | 0 | 66 | |
| SQC004055 | 3D | 5693 | 7072 | 0 | 0 | 1380 | |
| SQC004056 | 5'UTR | 1 | 616 | 0 | 0 | 616 | |
| SQC004057 | CDS | 617 | 7075 | 0 | 0 | 6459 | |
| SQC004058 | protease 3C | 5144 | 5692 | 0 | 0 | 549 | |
| SQC004059 | VP4/2 | 617 | 1051 | 0 | 0 | 435 | |
| SQC004060 | genome | 1 | 7114 | 0 | 1 | 7114 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC000190 | CDS | 1 | 2152 | 0 | 0 | 2152 | |
| SPC000191 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC000192 | 3D | 1693 | 2152 | 0 | 0 | 460 | |
| SPC000193 | 2C (P2-C) | 1087 | 1412 | 0 | 0 | 326 | |
| SPC000194 | 1D (VP1) | 571 | 845 | 0 | 0 | 275 | |
| SPC000195 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
| SPC000196 | 1C (VP3) | 332 | 570 | 0 | 0 | 239 | |
| SPC000197 | protease 3C | 1510 | 1692 | 0 | 0 | 183 | |
| SPC000198 | 2A (P2-A) | 846 | 987 | 0 | 0 | 142 | |
| SPC000199 | 2B (P2-B) | 988 | 1086 | 0 | 0 | 99 | |
| SPC000200 | 3A (P3-A) | 1413 | 1487 | 0 | 0 | 75 | |
| SPC000201 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC000202 | 3B (VPg) | 1488 | 1509 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 17804649 | Clinical features and complete genome characterization of a distinct human rhinovirus (HRV) genetic cluster, probably representing a previously undetected HRV species, HRV-C, associated with acute respiratory illness in children. | 2007 | J Clin Microbiol | View More |