| RVdb StrainID | CNC04949 | GenBank Accession | JF436926.1 |
| Species | RVC | Sequence Length | 2832 nt |
| Serotype | 34 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Rhinovirus C clone LRTI-metagenomic-2 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | -N/A- | Sampling Date | -N/A- |
| Sampling Country | Sweden | Sampling location | -N/A- |
| Isolation Source | nasopharyngeal aspirates | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC003549 | 1C (VP3) | 500 | 1217 | 0 | 0 | 718 | |
| SQC003550 | 1D (VP1) | 1218 | 2045 | 0 | 0 | 828 | |
| SQC003551 | 2A (P2-A) | 2046 | 2471 | 0 | 0 | 426 | |
| SQC003552 | 2B (P2-B) | 2472 | 2768 | 0 | 0 | 297 | |
| SQC003553 | CDS | 0 | 0 | 1 | 1 | 2832 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC002390 | CDS | 1 | 943 | 0 | 1 | 943 | |
| SPC002391 | 1D (VP1) | 406 | 681 | 0 | 0 | 276 | |
| SPC002392 | 1C (VP3) | 167 | 405 | 0 | 0 | 239 | |
| SPC002393 | 2A (P2-A) | 682 | 823 | 0 | 0 | 142 | |
| SPC002394 | 2B (P2-B) | 824 | 922 | 0 | 0 | 99 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 22355331 | Characterization of the viral microbiome in patients with severe lower respiratory tract infections, using metagenomic sequencing. | 2012 | PLoS One | View More |