| RVdb StrainID | CNC04099 | GenBank Accession | KJ675505.1 |
| Species | RVC | Sequence Length | 7123 nt |
| Serotype | 42 Checked by RVdb | Serotype (GenBank) | 42 |
| Definition | Rhinovirus C isolate 1570-MY-10, complete genome | GenBank Submission Date | 2022-11-03 |
| Strain Name | 1570-MY-10 | Sampling Date | 2010-11-19 |
| Sampling Country | Malaysia | Sampling location | -N/A- |
| Isolation Source | nasopharyngeal swab culture and sensitivity from patient with Staphylococcus pneumonia | NCBI Taxon ID | 463676 |
| Sequencing Technology | Sanger dideoxy sequencing | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC003039 | 1A (VP4) | 621 | 821 | 0 | 0 | 201 | |
| SQC003040 | 1B (VP2) | 822 | 1616 | 0 | 0 | 795 | |
| SQC003041 | 1C (VP3) | 1617 | 2330 | 0 | 0 | 714 | |
| SQC003042 | 1D (VP1) | 2331 | 3155 | 0 | 0 | 825 | |
| SQC003043 | 2A (P2-A) | 3156 | 3581 | 0 | 0 | 426 | |
| SQC003044 | 2B (P2-B) | 3582 | 3878 | 0 | 0 | 297 | |
| SQC003045 | 2C (P2-C) | 3879 | 4856 | 0 | 0 | 978 | |
| SQC003046 | 3'UTR | 7080 | 7123 | 0 | 0 | 44 | |
| SQC003047 | 3A (P3-A) | 4857 | 5081 | 0 | 0 | 225 | |
| SQC003048 | 3B (VPg) | 5082 | 5147 | 0 | 0 | 66 | |
| SQC003049 | 3D | 5697 | 7076 | 0 | 0 | 1380 | |
| SQC003050 | 5'UTR | 1 | 620 | 0 | 0 | 620 | |
| SQC003051 | CDS | 621 | 7079 | 0 | 0 | 6459 | |
| SQC003052 | protease 3C | 5148 | 5696 | 0 | 0 | 549 | |
| SQC003053 | VP4/2 | 621 | 1051 | 0 | 0 | 431 | |
| SQC003054 | genome | 1 | 7123 | 0 | 0 | 7123 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC005078 | CDS | 1 | 2152 | 0 | 0 | 2152 | |
| SPC005079 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC005080 | 3D | 1693 | 2152 | 0 | 0 | 460 | |
| SPC005081 | 2C (P2-C) | 1087 | 1412 | 0 | 0 | 326 | |
| SPC005082 | 1D (VP1) | 571 | 845 | 0 | 0 | 275 | |
| SPC005083 | 1B (VP2) | 68 | 332 | 0 | 0 | 265 | |
| SPC005084 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPC005085 | protease 3C | 1510 | 1692 | 0 | 0 | 183 | |
| SPC005086 | 2A (P2-A) | 846 | 987 | 0 | 0 | 142 | |
| SPC005087 | 2B (P2-B) | 988 | 1086 | 0 | 0 | 99 | |
| SPC005088 | 3A (P3-A) | 1413 | 1487 | 0 | 0 | 75 | |
| SPC005089 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC005090 | 3B (VPg) | 1488 | 1509 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 27199901 | Comparative Genetic Analyses of Human Rhinovirus C (HRV-C) Complete Genome from Malaysia. | 2016 | Front Microbiol | View More |