| RVdb StrainID | CNC00059 | GenBank Accession | OL961535.1 |
| Species | RVC | Sequence Length | 6911 nt |
| Serotype | 44 Checked by RVdb | Serotype (GenBank) | 44 |
| Definition | Rhinovirus C44 strain RvC44/USA/2021/PBXE3T, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | RvC44/USA/2021/PBXE3T | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 2045079 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC000162 | 1A (VP4) | 402 | 602 | 0 | 0 | 201 | |
| SQC000163 | 1B (VP2) | 603 | 1396 | 0 | 0 | 794 | |
| SQC000164 | 1C (VP3) | 1397 | 2114 | 0 | 0 | 718 | |
| SQC000165 | 1D (VP1) | 2115 | 2945 | 0 | 0 | 831 | |
| SQC000166 | 2A (P2-A) | 2946 | 3371 | 0 | 0 | 426 | |
| SQC000167 | 2B (P2-B) | 3372 | 3668 | 0 | 0 | 297 | |
| SQC000168 | 2C (P2-C) | 3669 | 4646 | 0 | 0 | 978 | |
| SQC000169 | 3A (P3-A) | 4647 | 4871 | 0 | 0 | 225 | |
| SQC000170 | 3B (VPg) | 4872 | 4937 | 0 | 0 | 66 | |
| SQC000171 | 3D | 5487 | 6866 | 0 | 0 | 1380 | |
| SQC000172 | CDS | 402 | 6869 | 0 | 0 | 6468 | |
| SQC000173 | protease 3C | 4938 | 5486 | 0 | 0 | 549 | |
| SQC000174 | VP4/2 | 402 | 832 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC016120 | CDS | 1 | 2155 | 0 | 0 | 2155 | |
| SPC016121 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC016122 | 3D | 1696 | 2155 | 0 | 0 | 460 | |
| SPC016123 | 2C (P2-C) | 1090 | 1415 | 0 | 0 | 326 | |
| SPC016124 | 1D (VP1) | 570 | 848 | 0 | 0 | 279 | |
| SPC016125 | 1B (VP2) | 68 | 332 | 0 | 0 | 265 | |
| SPC016126 | 1C (VP3) | 333 | 569 | 0 | 0 | 237 | |
| SPC016127 | protease 3C | 1513 | 1695 | 0 | 0 | 183 | |
| SPC016128 | 2A (P2-A) | 849 | 990 | 0 | 0 | 142 | |
| SPC016129 | 2B (P2-B) | 991 | 1089 | 0 | 0 | 99 | |
| SPC016130 | 3A (P3-A) | 1416 | 1490 | 0 | 0 | 75 | |
| SPC016131 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC016132 | 3B (VPg) | 1491 | 1512 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |