| RVdb StrainID | CNC00049 | GenBank Accession | OM001438.1 |
| Species | RVC | Sequence Length | 7039 nt |
| Serotype | 7 Checked by RVdb | Serotype (GenBank) | 7 |
| Definition | Rhinovirus C7 strain RvC7/USA/2021/LQUYNG, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | RvC7/USA/2021/LQUYNG | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1219379 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC000130 | 1A (VP4) | 577 | 777 | 0 | 0 | 201 | |
| SQC000131 | 1B (VP2) | 778 | 1566 | 0 | 0 | 789 | |
| SQC000132 | 1C (VP3) | 1567 | 2262 | 0 | 0 | 696 | |
| SQC000133 | 1D (VP1) | 2263 | 3078 | 0 | 0 | 816 | |
| SQC000134 | 2A (P2-A) | 3079 | 3504 | 0 | 0 | 426 | |
| SQC000135 | 2B (P2-B) | 3505 | 3795 | 0 | 0 | 291 | |
| SQC000136 | 2C (P2-C) | 3796 | 4770 | 0 | 0 | 975 | |
| SQC000137 | 3'UTR | 6997 | 7039 | 0 | 0 | 43 | |
| SQC000138 | 3A (P3-A) | 4771 | 4998 | 0 | 0 | 228 | |
| SQC000139 | 3B (VPg) | 4999 | 5064 | 0 | 0 | 66 | |
| SQC000140 | 3D | 5614 | 6993 | 0 | 0 | 1380 | |
| SQC000141 | 5'UTR | 0 | 576 | 1 | 0 | 576 | |
| SQC000142 | CDS | 577 | 6996 | 0 | 0 | 6420 | |
| SQC000143 | protease 3C | 5065 | 5613 | 0 | 0 | 549 | |
| SQC000144 | VP4/2 | 577 | 1007 | 0 | 0 | 431 | |
| SQC000145 | genome | 1 | 7039 | 1 | 0 | 7039 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC016004 | CDS | 1 | 2139 | 0 | 0 | 2139 | |
| SPC016005 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC016006 | 3D | 1680 | 2139 | 0 | 0 | 460 | |
| SPC016007 | 2C (P2-C) | 1074 | 1398 | 0 | 0 | 325 | |
| SPC016008 | 1D (VP1) | 563 | 834 | 0 | 0 | 272 | |
| SPC016009 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC016010 | 1C (VP3) | 331 | 562 | 0 | 0 | 232 | |
| SPC016011 | protease 3C | 1497 | 1679 | 0 | 0 | 183 | |
| SPC016012 | 2A (P2-A) | 835 | 975 | 0 | 0 | 141 | |
| SPC016013 | 2B (P2-B) | 976 | 1073 | 0 | 0 | 98 | |
| SPC016014 | 3A (P3-A) | 1399 | 1474 | 0 | 0 | 76 | |
| SPC016015 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC016016 | 3B (VPg) | 1475 | 1496 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |