| RVdb StrainID | CNC00044 | GenBank Accession | ON311150.1 |
| Species | RVC | Sequence Length | 7090 nt |
| Serotype | 56 Checked by RVdb | Serotype (GenBank) | 56 |
| Definition | Rhinovirus C strain C56_1 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | C56_1 | Sampling Date | 2020-09-21 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC000115 | 1A (VP4) | 595 | 795 | 0 | 0 | 201 | |
| SQC000116 | 1B (VP2) | 796 | 1581 | 0 | 0 | 786 | |
| SQC000117 | 1C (VP3) | 1582 | 2299 | 0 | 0 | 718 | |
| SQC000118 | 1D (VP1) | 2300 | 3138 | 0 | 0 | 839 | |
| SQC000119 | 2A (P2-A) | 3139 | 3564 | 0 | 0 | 426 | |
| SQC000120 | 2B (P2-B) | 3565 | 3861 | 0 | 0 | 297 | |
| SQC000121 | 2C (P2-C) | 3862 | 4839 | 0 | 0 | 978 | |
| SQC000122 | 3A (P3-A) | 4840 | 5064 | 0 | 0 | 225 | |
| SQC000123 | 3B (VPg) | 5065 | 5130 | 0 | 0 | 66 | |
| SQC000124 | 3D | 5680 | 7059 | 0 | 0 | 1380 | |
| SQC000125 | 5'UTR | 0 | 594 | 1 | 0 | 594 | |
| SQC000126 | CDS | 595 | 7062 | 0 | 0 | 6468 | |
| SQC000127 | protease 3C | 5131 | 5679 | 0 | 0 | 549 | |
| SQC000128 | VP4/2 | 595 | 1025 | 0 | 0 | 431 | |
| SQC000129 | genome | 1 | 7090 | 1 | 1 | 7090 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017368 | CDS | 1 | 2155 | 0 | 0 | 2155 | |
| SPC017369 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017370 | 3D | 1696 | 2155 | 0 | 0 | 460 | |
| SPC017371 | 2C (P2-C) | 1090 | 1415 | 0 | 0 | 326 | |
| SPC017372 | 1D (VP1) | 567 | 848 | 0 | 0 | 282 | |
| SPC017373 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC017374 | 1C (VP3) | 330 | 566 | 0 | 0 | 237 | |
| SPC017375 | protease 3C | 1513 | 1695 | 0 | 0 | 183 | |
| SPC017376 | 2A (P2-A) | 849 | 990 | 0 | 0 | 142 | |
| SPC017377 | 2B (P2-B) | 991 | 1089 | 0 | 0 | 99 | |
| SPC017378 | 3A (P3-A) | 1416 | 1490 | 0 | 0 | 75 | |
| SPC017379 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017380 | 3B (VPg) | 1491 | 1512 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |