| RVdb StrainID | CNC00039 | GenBank Accession | ON311155.1 |
| Species | RVC | Sequence Length | 6957 nt |
| Serotype | 43 Checked by RVdb | Serotype (GenBank) | 43 |
| Definition | Rhinovirus C43 strain C43_3 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | C43_3 | Sampling Date | 2021-03-08 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1219413 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC000100 | 1A (VP4) | 516 | 716 | 0 | 0 | 201 | |
| SQC000101 | 1B (VP2) | 717 | 1505 | 0 | 0 | 789 | |
| SQC000102 | 1C (VP3) | 1506 | 2204 | 0 | 0 | 699 | |
| SQC000103 | 1D (VP1) | 2205 | 3020 | 0 | 0 | 816 | |
| SQC000104 | 2A (P2-A) | 3021 | 3443 | 0 | 0 | 423 | |
| SQC000105 | 2B (P2-B) | 3444 | 3737 | 0 | 0 | 294 | |
| SQC000106 | 2C (P2-C) | 3738 | 4712 | 0 | 0 | 975 | |
| SQC000107 | 3A (P3-A) | 4713 | 4940 | 0 | 0 | 228 | |
| SQC000108 | 3B (VPg) | 4941 | 5006 | 0 | 0 | 66 | |
| SQC000109 | 3D | 5556 | 6935 | 0 | 0 | 1380 | |
| SQC000110 | 5'UTR | 0 | 515 | 1 | 0 | 515 | |
| SQC000111 | CDS | 516 | 6938 | 0 | 0 | 6423 | |
| SQC000112 | protease 3C | 5007 | 5555 | 0 | 0 | 549 | |
| SQC000113 | VP4/2 | 516 | 946 | 0 | 0 | 431 | |
| SQC000114 | genome | 1 | 6957 | 1 | 1 | 6957 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017433 | CDS | 1 | 2140 | 0 | 0 | 2140 | |
| SPC017434 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017435 | 3D | 1681 | 2140 | 0 | 0 | 460 | |
| SPC017436 | 2C (P2-C) | 1075 | 1399 | 0 | 0 | 325 | |
| SPC017437 | 1D (VP1) | 561 | 835 | 0 | 0 | 275 | |
| SPC017438 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC017439 | 1C (VP3) | 331 | 560 | 0 | 0 | 230 | |
| SPC017440 | protease 3C | 1498 | 1680 | 0 | 0 | 183 | |
| SPC017441 | 2A (P2-A) | 836 | 977 | 0 | 0 | 142 | |
| SPC017442 | 2B (P2-B) | 978 | 1074 | 0 | 0 | 97 | |
| SPC017443 | 3A (P3-A) | 1400 | 1475 | 0 | 0 | 76 | |
| SPC017444 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017445 | 3B (VPg) | 1476 | 1497 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |