| RVdb StrainID | CNC00014 | GenBank Accession | ON311180.1 |
| Species | RVC | Sequence Length | 6954 nt |
| Serotype | 1 Checked by RVdb | Serotype (GenBank) | 1 |
| Definition | Rhinovirus C strain C1_1 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | C1_1 | Sampling Date | 2020-11-28 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC000021 | 1A (VP4) | 494 | 694 | 0 | 0 | 201 | |
| SQC000022 | 1B (VP2) | 695 | 1486 | 0 | 0 | 792 | |
| SQC000023 | 1C (VP3) | 1487 | 2188 | 0 | 0 | 702 | |
| SQC000024 | 1D (VP1) | 2189 | 3004 | 0 | 0 | 816 | |
| SQC000025 | 2A (P2-A) | 3005 | 3427 | 0 | 0 | 423 | |
| SQC000026 | 2B (P2-B) | 3428 | 3721 | 0 | 0 | 294 | |
| SQC000027 | 2C (P2-C) | 3722 | 4696 | 0 | 0 | 975 | |
| SQC000028 | 3'UTR | 6923 | 0 | 0 | 1 | 32 | |
| SQC000029 | 3A (P3-A) | 4697 | 4924 | 0 | 0 | 228 | |
| SQC000030 | 3B (VPg) | 4925 | 4990 | 0 | 0 | 66 | |
| SQC000031 | 3D | 5540 | 6919 | 0 | 0 | 1380 | |
| SQC000032 | 5'UTR | 0 | 493 | 1 | 0 | 493 | |
| SQC000033 | CDS | 494 | 6922 | 0 | 0 | 6429 | |
| SQC000034 | protease 3C | 4991 | 5539 | 0 | 0 | 549 | |
| SQC000035 | VP4/2 | 494 | 924 | 0 | 0 | 431 | |
| SQC000036 | genome | 1 | 6954 | 1 | 1 | 6954 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017750 | CDS | 1 | 2142 | 0 | 0 | 2142 | |
| SPC017751 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017752 | 3D | 1683 | 2142 | 0 | 0 | 460 | |
| SPC017753 | 2C (P2-C) | 1077 | 1401 | 0 | 0 | 325 | |
| SPC017754 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
| SPC017755 | 1C (VP3) | 332 | 566 | 0 | 0 | 235 | |
| SPC017756 | protease 3C | 1500 | 1682 | 0 | 0 | 183 | |
| SPC017757 | 2A (P2-A) | 838 | 978 | 0 | 0 | 141 | |
| SPC017758 | 2B (P2-B) | 979 | 1076 | 0 | 0 | 98 | |
| SPC017759 | 3A (P3-A) | 1402 | 1477 | 0 | 0 | 76 | |
| SPC017760 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017761 | 3B (VPg) | 1478 | 1499 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |