| RVdb StrainID | CNC00009 | GenBank Accession | ON311280.1 |
| Species | RVC | Sequence Length | 6921 nt |
| Serotype | 43 Checked by RVdb | Serotype (GenBank) | 43 |
| Definition | Rhinovirus C43 strain C43_1 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | C43_1 | Sampling Date | 2020-07-31 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1219413 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC000007 | 1A (VP4) | 515 | 715 | 0 | 0 | 201 | |
| SQC000008 | 1B (VP2) | 716 | 1504 | 0 | 0 | 789 | |
| SQC000009 | 1C (VP3) | 1505 | 2203 | 0 | 0 | 699 | |
| SQC000010 | 1D (VP1) | 2204 | 3019 | 0 | 0 | 816 | |
| SQC000011 | 2A (P2-A) | 3020 | 3442 | 0 | 0 | 423 | |
| SQC000012 | 2B (P2-B) | 3443 | 3736 | 0 | 0 | 294 | |
| SQC000013 | 2C (P2-C) | 3737 | 4711 | 0 | 0 | 975 | |
| SQC000014 | 3A (P3-A) | 4712 | 4939 | 0 | 0 | 228 | |
| SQC000015 | 3B (VPg) | 4940 | 5005 | 0 | 0 | 66 | |
| SQC000016 | 3D | 5555 | 0 | 0 | 1 | 1367 | |
| SQC000017 | 5'UTR | 0 | 514 | 1 | 0 | 514 | |
| SQC000018 | CDS | 515 | 0 | 0 | 1 | 6407 | |
| SQC000019 | protease 3C | 5006 | 5554 | 0 | 0 | 549 | |
| SQC000020 | VP4/2 | 515 | 945 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017814 | CDS | 1 | 2135 | 0 | 0 | 2135 | |
| SPC017815 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017816 | 3D | 1681 | 2135 | 0 | 1 | 455 | |
| SPC017817 | 2C (P2-C) | 1075 | 1399 | 0 | 0 | 325 | |
| SPC017818 | 1D (VP1) | 561 | 835 | 0 | 0 | 275 | |
| SPC017819 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC017820 | 1C (VP3) | 331 | 560 | 0 | 0 | 230 | |
| SPC017821 | protease 3C | 1498 | 1680 | 0 | 0 | 183 | |
| SPC017822 | 2A (P2-A) | 836 | 977 | 0 | 0 | 142 | |
| SPC017823 | 3A (P3-A) | 1400 | 1475 | 0 | 0 | 76 | |
| SPC017824 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017825 | 3B (VPg) | 1476 | 1497 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |