| RVdb StrainID | BNS00048 | GenBank Accession | OL961520.1 |
| Species | RVB | Sequence Length | 7174 nt |
| Serotype | 42 Checked by RVdb | Serotype (GenBank) | 42 |
| Definition | Rhinovirus B42 strain RvB42/USA/2021/6DHJVN, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | RvB42/USA/2021/6DHJVN | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 147683 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB004927 | 1A (VP4) | 617 | 823 | 0 | 0 | 207 | |
| SQB004928 | 1B (VP2) | 824 | 1603 | 0 | 0 | 780 | |
| SQB004929 | 1C (VP3) | 1604 | 2311 | 0 | 0 | 708 | |
| SQB004930 | 1D (VP1) | 2312 | 3175 | 0 | 0 | 864 | |
| SQB004931 | 2A (P2-A) | 3176 | 3616 | 0 | 0 | 441 | |
| SQB004932 | 2B (P2-B) | 3617 | 3907 | 0 | 0 | 291 | |
| SQB004933 | 2C (P2-C) | 3908 | 4897 | 0 | 0 | 990 | |
| SQB004934 | 3A (P3-A) | 4898 | 5152 | 0 | 0 | 255 | |
| SQB004935 | 3B (VPg) | 5153 | 5221 | 0 | 0 | 69 | |
| SQB004936 | 3D | 5768 | 7147 | 0 | 0 | 1380 | |
| SQB004937 | 5'UTR | 1 | 616 | 1 | 0 | 616 | |
| SQB004938 | CDS | 617 | 7150 | 0 | 0 | 6534 | |
| SQB004939 | protease 3C | 5222 | 5767 | 0 | 0 | 546 | |
| SQB004940 | VP4/2 | 617 | 1053 | 0 | 0 | 437 | |
| SQB004941 | genome | 1 | 7174 | 1 | 1 | 7174 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB005853 | protease 3C | 1536 | 1717 | 0 | 0 | 182 | |
| SPB005854 | 3D | 1718 | 2177 | 0 | 0 | 460 | |
| SPB005855 | 3B (VPg) | 1513 | 1535 | 0 | 0 | 23 | |
| SPB005856 | 3A (P3-A) | 1428 | 1512 | 0 | 0 | 85 | |
| SPB005857 | 2C (P2-C) | 1098 | 1427 | 0 | 0 | 330 | |
| SPB005858 | 2B (P2-B) | 1001 | 1097 | 0 | 0 | 97 | |
| SPB005859 | 2A (P2-A) | 854 | 1000 | 0 | 0 | 147 | |
| SPB005860 | 1D (VP1) | 566 | 853 | 0 | 0 | 288 | |
| SPB005861 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPB005862 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPB005863 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB005864 | CDS | 1 | 2177 | 0 | 0 | 2177 | |
| SPB005865 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |