| RVdb StrainID | BNP01137 | GenBank Accession | KF958308.1 |
| Species | RVB | Sequence Length | 7216 nt |
| Serotype | 104 Corrected by RVdb | Serotype (GenBank) | 52 |
| Definition | Rhinovirus B isolate 3039, complete genome | GenBank Submission Date | 2022-11-03 |
| Strain Name | 3039 | Sampling Date | 1999-10-20 |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 147712 |
| Sequencing Technology | Sanger dideoxy sequencing | Assembly Method | DNAStar SeqMan Pro v. 9.1 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB004229 | 1A (VP4) | 625 | 831 | 0 | 0 | 207 | |
| SQB004230 | 1B (VP2) | 832 | 1617 | 0 | 0 | 786 | |
| SQB004231 | 1C (VP3) | 1618 | 2325 | 0 | 0 | 708 | |
| SQB004232 | 1D (VP1) | 2326 | 3204 | 0 | 0 | 879 | |
| SQB004233 | 2A (P2-A) | 3205 | 3642 | 0 | 0 | 438 | |
| SQB004234 | 2B (P2-B) | 3643 | 3933 | 0 | 0 | 291 | |
| SQB004235 | 2C (P2-C) | 3934 | 4923 | 0 | 0 | 990 | |
| SQB004236 | 3'UTR | 7177 | 7216 | 0 | 0 | 40 | |
| SQB004237 | 3A (P3-A) | 4924 | 5178 | 0 | 0 | 255 | |
| SQB004238 | 3B (VPg) | 5179 | 5247 | 0 | 0 | 69 | |
| SQB004239 | 3D | 5794 | 7173 | 0 | 0 | 1380 | |
| SQB004240 | 5'UTR | 1 | 624 | 0 | 0 | 624 | |
| SQB004241 | CDS | 625 | 7176 | 0 | 0 | 6552 | |
| SQB004242 | protease 3C | 5248 | 5793 | 0 | 0 | 546 | |
| SQB004243 | VP4/2 | 625 | 1061 | 0 | 0 | 437 | |
| SQB004244 | genome | 1 | 7216 | 0 | 0 | 7216 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB001911 | protease 3C | 1542 | 1723 | 0 | 0 | 182 | |
| SPB001912 | 3D | 1724 | 2183 | 0 | 0 | 460 | |
| SPB001913 | 3B (VPg) | 1519 | 1541 | 0 | 0 | 23 | |
| SPB001914 | 3A (P3-A) | 1434 | 1518 | 0 | 0 | 85 | |
| SPB001915 | 2C (P2-C) | 1104 | 1433 | 0 | 0 | 330 | |
| SPB001916 | 2B (P2-B) | 1007 | 1103 | 0 | 0 | 97 | |
| SPB001917 | 2A (P2-A) | 861 | 1006 | 0 | 0 | 146 | |
| SPB001918 | 1D (VP1) | 568 | 860 | 0 | 0 | 293 | |
| SPB001919 | 1C (VP3) | 332 | 567 | 0 | 0 | 236 | |
| SPB001920 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPB001921 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB001922 | CDS | 1 | 2183 | 0 | 0 | 2183 | |
| SPB001923 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24636084 | Effects of rhinovirus species on viral replication and cytokine production. | 2014 | J Allergy Clin Immunol | View More |