| RVdb StrainID | BNM00770 | GenBank Accession | LC495296.1 |
| Species | RVB | Sequence Length | 7259 nt |
| Serotype | 6 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Rhinovirus B take1 genomic RNA, complete genome | GenBank Submission Date | 2022-11-03 |
| Strain Name | take1 | Sampling Date | 2017-06-09 |
| Sampling Country | Japan | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 147712 |
| Sequencing Technology | Illumina Miseq | Assembly Method | CLC genomics workbench 9.5 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB002370 | 1A (VP4) | 649 | 855 | 0 | 0 | 207 | |
| SQB002371 | 1B (VP2) | 856 | 1641 | 0 | 0 | 786 | |
| SQB002372 | 1C (VP3) | 1642 | 2349 | 0 | 0 | 708 | |
| SQB002373 | 1D (VP1) | 2350 | 3219 | 0 | 0 | 870 | |
| SQB002374 | 2A (P2-A) | 3220 | 3657 | 0 | 0 | 438 | |
| SQB002375 | 2B (P2-B) | 3658 | 3948 | 0 | 0 | 291 | |
| SQB002376 | 2C (P2-C) | 3949 | 4938 | 0 | 0 | 990 | |
| SQB002377 | 3'UTR | 7192 | 7240 | 0 | 0 | 49 | |
| SQB002378 | 3A (P3-A) | 4939 | 5193 | 0 | 0 | 255 | |
| SQB002379 | 3B (VPg) | 5194 | 5262 | 0 | 0 | 69 | |
| SQB002380 | 3D | 5809 | 7188 | 0 | 0 | 1380 | |
| SQB002381 | 5'UTR | 1 | 648 | 0 | 0 | 648 | |
| SQB002382 | CDS | 649 | 7191 | 0 | 0 | 6543 | |
| SQB002383 | protease 3C | 5263 | 5808 | 0 | 0 | 546 | |
| SQB002384 | VP4/2 | 649 | 1085 | 0 | 0 | 437 | |
| SQB002385 | genome | 1 | 7259 | 0 | 0 | 7259 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB003599 | protease 3C | 1539 | 1720 | 0 | 0 | 182 | |
| SPB003600 | 3D | 1721 | 2180 | 0 | 0 | 460 | |
| SPB003601 | 3B (VPg) | 1516 | 1538 | 0 | 0 | 23 | |
| SPB003602 | 3A (P3-A) | 1431 | 1515 | 0 | 0 | 85 | |
| SPB003603 | 2C (P2-C) | 1101 | 1430 | 0 | 0 | 330 | |
| SPB003604 | 2B (P2-B) | 1004 | 1100 | 0 | 0 | 97 | |
| SPB003605 | 2A (P2-A) | 858 | 1003 | 0 | 0 | 146 | |
| SPB003606 | 1D (VP1) | 568 | 857 | 0 | 0 | 290 | |
| SPB003607 | 1C (VP3) | 332 | 567 | 0 | 0 | 236 | |
| SPB003608 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPB003609 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB003610 | CDS | 1 | 2180 | 0 | 0 | 2180 | |
| SPB003611 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 31501513 | Metagenomic analysis using next-generation sequencing of pathogens in bronchoalveolar lavage fluid from pediatric patients with respiratory failure. | 2019 | Sci Rep | View More |