| RVdb StrainID | BNC00009 | GenBank Accession | ON311198.1 |
| Species | RVB | Sequence Length | 7097 nt |
| Serotype | 27 Checked by RVdb | Serotype (GenBank) | 27 |
| Definition | Rhinovirus B27 strain B27_5 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | B27_5 | Sampling Date | 2020-10-05 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 185900 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQB000015 | 1A (VP4) | 530 | 736 | 0 | 0 | 207 | |
| SQB000016 | 1B (VP2) | 737 | 1522 | 0 | 0 | 786 | |
| SQB000017 | 1C (VP3) | 1523 | 2230 | 0 | 0 | 708 | |
| SQB000018 | 1D (VP1) | 2231 | 3091 | 0 | 0 | 861 | |
| SQB000019 | 2A (P2-A) | 3092 | 3532 | 0 | 0 | 441 | |
| SQB000020 | 2B (P2-B) | 3533 | 3823 | 0 | 0 | 291 | |
| SQB000021 | 2C (P2-C) | 3824 | 4813 | 0 | 0 | 990 | |
| SQB000022 | 3A (P3-A) | 4814 | 5068 | 0 | 0 | 255 | |
| SQB000023 | 3B (VPg) | 5069 | 5137 | 0 | 0 | 69 | |
| SQB000024 | 3D | 5684 | 7063 | 0 | 0 | 1380 | |
| SQB000025 | 5'UTR | 1 | 529 | 1 | 0 | 529 | |
| SQB000026 | CDS | 530 | 7066 | 0 | 0 | 6537 | |
| SQB000027 | protease 3C | 5138 | 5683 | 0 | 0 | 546 | |
| SQB000028 | VP4/2 | 530 | 966 | 0 | 0 | 437 | |
| SQB000029 | genome | 1 | 7097 | 1 | 1 | 7097 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPB006459 | protease 3C | 1537 | 1718 | 0 | 0 | 182 | |
| SPB006460 | 3D | 1719 | 2178 | 0 | 0 | 460 | |
| SPB006461 | 3B (VPg) | 1514 | 1536 | 0 | 0 | 23 | |
| SPB006462 | 3A (P3-A) | 1429 | 1513 | 0 | 0 | 85 | |
| SPB006463 | 2C (P2-C) | 1099 | 1428 | 0 | 0 | 330 | |
| SPB006464 | 2B (P2-B) | 1002 | 1098 | 0 | 0 | 97 | |
| SPB006465 | 2A (P2-A) | 857 | 1001 | 0 | 0 | 145 | |
| SPB006466 | 1D (VP1) | 568 | 856 | 0 | 0 | 289 | |
| SPB006467 | 1C (VP3) | 332 | 567 | 0 | 0 | 236 | |
| SPB006468 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPB006469 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPB006470 | CDS | 1 | 2178 | 0 | 0 | 2178 | |
| SPB006471 | VP4/2 | 1 | 145 | 0 | 0 | 145 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |