| RVdb StrainID | ANZ08331 | GenBank Accession | DQ473504.1 |
| Species | RVA | Sequence Length | 7143 nt |
| Serotype | 88 Checked by RVdb | Serotype (GenBank) | 88 |
| Definition | Rhinovirus A88, complete genome | GenBank Submission Date | 2022-01-24 |
| Strain Name | -N/A- | Sampling Date | -N/A- |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | -N/A- | NCBI Taxon ID | 185939 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA038559 | 1A (VP4) | 622 | 828 | 0 | 0 | 207 | |
| SQA038560 | 1B (VP2) | 829 | 1623 | 0 | 0 | 795 | |
| SQA038561 | 1C (VP3) | 1624 | 2337 | 0 | 0 | 714 | |
| SQA038562 | 1D (VP1) | 2338 | 3207 | 0 | 0 | 870 | |
| SQA038563 | 2A (P2-A) | 3208 | 3633 | 0 | 0 | 426 | |
| SQA038564 | 2B (P2-B) | 3634 | 3918 | 0 | 0 | 285 | |
| SQA038565 | 2C (P2-C) | 3919 | 4881 | 0 | 0 | 963 | |
| SQA038566 | 3'UTR | 7105 | 7143 | 0 | 0 | 39 | |
| SQA038567 | 3A (P3-A) | 4882 | 5109 | 0 | 0 | 228 | |
| SQA038568 | 3B (VPg) | 5110 | 5172 | 0 | 0 | 63 | |
| SQA038569 | protease 3C | 5173 | 5721 | 0 | 0 | 549 | |
| SQA038570 | 3D | 5722 | 7101 | 0 | 0 | 1380 | |
| SQA038571 | 5'UTR | 1 | 621 | 0 | 0 | 621 | |
| SQA038572 | CDS | 622 | 7104 | 0 | 0 | 6483 | |
| SQA038573 | VP4/2 | 622 | 1056 | 0 | 0 | 435 | |
| SQA038574 | genome | 1 | 7143 | 0 | 0 | 7143 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA000698 | protease 3C | 1518 | 1700 | 0 | 0 | 183 | |
| SPA000699 | 3D | 1701 | 2160 | 0 | 0 | 460 | |
| SPA000700 | 3B (VPg) | 1497 | 1517 | 0 | 0 | 21 | |
| SPA000701 | 3A (P3-A) | 1421 | 1496 | 0 | 0 | 76 | |
| SPA000702 | 2C (P2-C) | 1100 | 1420 | 0 | 0 | 321 | |
| SPA000703 | 2B (P2-B) | 1005 | 1099 | 0 | 0 | 95 | |
| SPA000704 | 2A (P2-A) | 863 | 1004 | 0 | 0 | 142 | |
| SPA000705 | 1D (VP1) | 573 | 862 | 0 | 0 | 290 | |
| SPA000706 | 1C (VP3) | 335 | 572 | 0 | 0 | 238 | |
| SPA000707 | 1B (VP2) | 70 | 334 | 0 | 0 | 265 | |
| SPA000708 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA000709 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA000710 | CDS | 1 | 2160 | 0 | 0 | 2160 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 17477878 | Genome-wide diversity and selective pressure in the human rhinovirus. | 2007 | Virol J | View More |