| RVdb StrainID | ANZ04536 | GenBank Accession | KX891411.1 |
| Species | RVA | Sequence Length | 7116 nt |
| Serotype | 16 Checked by RVdb | Serotype (GenBank) | 16 |
| Definition | Rhinovirus A16 isolate KC939 clone pR16.939, complete genome | GenBank Submission Date | 2017-02-16 |
| Strain Name | KC939 | Sampling Date | 1985 |
| Sampling Country | USA | Sampling location | -N/A- |
| Isolation Source | nasal lavage sample from an experimentally infected virus recipient | NCBI Taxon ID | 31708 |
| Sequencing Technology | Sanger dideoxy sequencing | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA036131 | 1A (VP4) | 618 | 824 | 0 | 0 | 207 | |
| SQA036132 | 1B (VP2) | 825 | 1607 | 0 | 0 | 783 | |
| SQA036133 | 1C (VP3) | 1608 | 2321 | 0 | 0 | 714 | |
| SQA036134 | 1D (VP1) | 2322 | 3176 | 0 | 0 | 855 | |
| SQA036135 | 2A (P2-A) | 3177 | 3602 | 0 | 0 | 426 | |
| SQA036136 | 2B (P2-B) | 3603 | 3887 | 0 | 0 | 285 | |
| SQA036137 | 2C (P2-C) | 3888 | 4853 | 0 | 0 | 966 | |
| SQA036138 | 3'UTR | 7080 | 7116 | 0 | 0 | 37 | |
| SQA036139 | 3A (P3-A) | 4854 | 5084 | 0 | 0 | 231 | |
| SQA036140 | 3B (VPg) | 5085 | 5147 | 0 | 0 | 63 | |
| SQA036141 | protease 3C | 5148 | 5696 | 0 | 0 | 549 | |
| SQA036142 | 3D | 5697 | 7076 | 0 | 0 | 1380 | |
| SQA036143 | 5'UTR | 1 | 617 | 0 | 0 | 617 | |
| SQA036144 | CDS | 618 | 7079 | 0 | 0 | 6462 | |
| SQA036145 | VP4/2 | 618 | 1052 | 0 | 0 | 435 | |
| SQA036146 | genome | 1 | 7116 | 0 | 0 | 7116 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA010604 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPA010605 | 3D | 1694 | 2149 | 0 | 0 | 456 | |
| SPA010606 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 | |
| SPA010607 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
| SPA010608 | 2C (P2-C) | 1091 | 1412 | 0 | 0 | 322 | |
| SPA010609 | 2B (P2-B) | 996 | 1090 | 0 | 0 | 95 | |
| SPA010610 | 2A (P2-A) | 854 | 995 | 0 | 0 | 142 | |
| SPA010611 | 1D (VP1) | 569 | 853 | 0 | 0 | 285 | |
| SPA010612 | 1C (VP3) | 331 | 568 | 0 | 0 | 238 | |
| SPA010613 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA010614 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA010615 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA010616 | CDS | 1 | 2153 | 0 | 0 | 2153 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 27743961 | Mutations in VP1 and 3A proteins improve binding and replication of rhinovirus C15 in HeLa-E8 cells. | 2016 | Virology | View More |