| RVdb StrainID | ANZ00211 | GenBank Accession | OL961519.1 |
| Species | RVA | Sequence Length | 7045 nt |
| Serotype | 1 Corrected by RVdb | Serotype (GenBank) | 1B |
| Definition | Rhinovirus A1B strain RvA1B/USA/2021/5HQQCR, complete genome | GenBank Submission Date | 2022-01-13 |
| Strain Name | RvA1B/USA/2021/5HQQCR | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 2777147 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA031900 | 1A (VP4) | 536 | 742 | 0 | 0 | 207 | |
| SQA031901 | 1B (VP2) | 743 | 1531 | 0 | 0 | 789 | |
| SQA031902 | 1C (VP3) | 1532 | 2242 | 0 | 0 | 711 | |
| SQA031903 | 1D (VP1) | 2243 | 3103 | 0 | 0 | 861 | |
| SQA031904 | 2A (P2-A) | 3104 | 3529 | 0 | 0 | 426 | |
| SQA031905 | 2B (P2-B) | 3530 | 3814 | 0 | 0 | 285 | |
| SQA031906 | 2C (P2-C) | 3815 | 4780 | 0 | 0 | 966 | |
| SQA031907 | 3'UTR | 7007 | 7043 | 0 | 0 | 37 | |
| SQA031908 | 3A (P3-A) | 4781 | 5011 | 0 | 0 | 231 | |
| SQA031909 | 3B (VPg) | 5012 | 5074 | 0 | 0 | 63 | |
| SQA031910 | protease 3C | 5075 | 5623 | 0 | 0 | 549 | |
| SQA031911 | 3D | 5624 | 7003 | 0 | 0 | 1380 | |
| SQA031912 | 5'UTR | 1 | 535 | 1 | 0 | 535 | |
| SQA031913 | CDS | 536 | 7006 | 0 | 0 | 6471 | |
| SQA031914 | VP4/2 | 536 | 970 | 0 | 0 | 435 | |
| SQA031915 | genome | 1 | 7045 | 1 | 0 | 7045 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA027549 | protease 3C | 1514 | 1696 | 0 | 0 | 183 | |
| SPA027550 | 3D | 1697 | 2152 | 0 | 0 | 456 | |
| SPA027551 | 3B (VPg) | 1493 | 1513 | 0 | 0 | 21 | |
| SPA027552 | 3A (P3-A) | 1416 | 1492 | 0 | 0 | 77 | |
| SPA027553 | 2C (P2-C) | 1094 | 1415 | 0 | 0 | 322 | |
| SPA027554 | 2B (P2-B) | 999 | 1093 | 0 | 0 | 95 | |
| SPA027555 | 2A (P2-A) | 857 | 998 | 0 | 0 | 142 | |
| SPA027556 | 1D (VP1) | 570 | 856 | 0 | 0 | 287 | |
| SPA027557 | 1C (VP3) | 333 | 569 | 0 | 0 | 237 | |
| SPA027558 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA027559 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA027560 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA027561 | CDS | 1 | 2156 | 0 | 0 | 2156 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |