| RVdb StrainID | ANZ00116 | GenBank Accession | OM001440.1 |
| Species | RVA | Sequence Length | 7090 nt |
| Serotype | 101 Checked by RVdb | Serotype (GenBank) | 101 |
| Definition | Rhinovirus A101 strain RvA101/USA/2021/MUXYR5, complete genome | GenBank Submission Date | 2022-01-13 |
| Strain Name | RvA101/USA/2021/MUXYR5 | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1219381 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA031600 | 1A (VP4) | 576 | 782 | 0 | 0 | 207 | |
| SQA031601 | 1B (VP2) | 783 | 1565 | 0 | 0 | 783 | |
| SQA031602 | 1C (VP3) | 1566 | 2279 | 0 | 0 | 714 | |
| SQA031603 | 1D (VP1) | 2280 | 3146 | 0 | 0 | 867 | |
| SQA031604 | 2A (P2-A) | 3147 | 3575 | 0 | 0 | 429 | |
| SQA031605 | 2B (P2-B) | 3576 | 3860 | 0 | 0 | 285 | |
| SQA031606 | 2C (P2-C) | 3861 | 4823 | 0 | 0 | 963 | |
| SQA031607 | 3'UTR | 7050 | 7090 | 0 | 0 | 41 | |
| SQA031608 | 3A (P3-A) | 4824 | 5057 | 0 | 0 | 234 | |
| SQA031609 | 3B (VPg) | 5058 | 5120 | 0 | 0 | 63 | |
| SQA031610 | protease 3C | 5121 | 5669 | 0 | 0 | 549 | |
| SQA031611 | 3D | 5670 | 7046 | 0 | 0 | 1377 | |
| SQA031612 | 5'UTR | 1 | 575 | 1 | 0 | 575 | |
| SQA031613 | CDS | 576 | 7049 | 0 | 0 | 6474 | |
| SQA031614 | VP4/2 | 576 | 1010 | 0 | 0 | 435 | |
| SQA031615 | genome | 1 | 7090 | 1 | 0 | 7090 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA027237 | protease 3C | 1516 | 1698 | 0 | 0 | 183 | |
| SPA027238 | 3D | 1699 | 2157 | 0 | 0 | 459 | |
| SPA027239 | 3B (VPg) | 1495 | 1515 | 0 | 0 | 21 | |
| SPA027240 | 3A (P3-A) | 1417 | 1494 | 0 | 0 | 78 | |
| SPA027241 | 2C (P2-C) | 1096 | 1416 | 0 | 0 | 321 | |
| SPA027242 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
| SPA027243 | 2A (P2-A) | 858 | 1000 | 0 | 0 | 143 | |
| SPA027244 | 1D (VP1) | 569 | 857 | 0 | 0 | 289 | |
| SPA027245 | 1C (VP3) | 331 | 568 | 0 | 0 | 238 | |
| SPA027246 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA027247 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA027248 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA027249 | CDS | 1 | 2157 | 0 | 0 | 2157 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |