| RVdb StrainID | ANZ00111 | GenBank Accession | OM001446.1 |
| Species | RVA | Sequence Length | 7113 nt |
| Serotype | 22 Checked by RVdb | Serotype (GenBank) | 22 |
| Definition | Rhinovirus A22 strain RvA22/USA/2021/SSQTUD, complete genome | GenBank Submission Date | 2022-01-13 |
| Strain Name | RvA22/USA/2021/SSQTUD | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 185896 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA031584 | 1A (VP4) | 590 | 796 | 0 | 0 | 207 | |
| SQA031585 | 1B (VP2) | 797 | 1588 | 0 | 0 | 792 | |
| SQA031586 | 1C (VP3) | 1589 | 2299 | 0 | 0 | 711 | |
| SQA031587 | 1D (VP1) | 2300 | 3166 | 0 | 0 | 867 | |
| SQA031588 | 2A (P2-A) | 3167 | 3592 | 0 | 0 | 426 | |
| SQA031589 | 2B (P2-B) | 3593 | 3877 | 0 | 0 | 285 | |
| SQA031590 | 2C (P2-C) | 3878 | 4843 | 0 | 0 | 966 | |
| SQA031591 | 3'UTR | 7070 | 7113 | 0 | 0 | 44 | |
| SQA031592 | 3A (P3-A) | 4844 | 5074 | 0 | 0 | 231 | |
| SQA031593 | 3B (VPg) | 5075 | 5137 | 0 | 0 | 63 | |
| SQA031594 | protease 3C | 5138 | 5686 | 0 | 0 | 549 | |
| SQA031595 | 3D | 5687 | 7066 | 0 | 0 | 1380 | |
| SQA031596 | 5'UTR | 1 | 589 | 1 | 0 | 589 | |
| SQA031597 | CDS | 590 | 7069 | 0 | 0 | 6480 | |
| SQA031598 | VP4/2 | 590 | 1024 | 0 | 0 | 435 | |
| SQA031599 | genome | 1 | 7113 | 1 | 0 | 7113 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA027302 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA027303 | 3D | 1700 | 2159 | 0 | 0 | 460 | |
| SPA027304 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA027305 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA027306 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA027307 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA027308 | 2A (P2-A) | 860 | 1001 | 0 | 0 | 142 | |
| SPA027309 | 1D (VP1) | 571 | 859 | 0 | 0 | 289 | |
| SPA027310 | 1C (VP3) | 334 | 570 | 0 | 0 | 237 | |
| SPA027311 | 1B (VP2) | 70 | 333 | 0 | 0 | 264 | |
| SPA027312 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA027313 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA027314 | CDS | 1 | 2159 | 0 | 0 | 2159 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |