| RVdb StrainID | ANZ00091 | GenBank Accession | ON311204.1 |
| Species | RVA | Sequence Length | 7038 nt |
| Serotype | 101 Checked by RVdb | Serotype (GenBank) | 101 |
| Definition | Rhinovirus A101 strain A101_2 polyprotein gene, complete cds | GenBank Submission Date | 2022-07-19 |
| Strain Name | A101_2 | Sampling Date | 2021-04-07 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1219381 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA031520 | 1A (VP4) | 540 | 746 | 0 | 0 | 207 | |
| SQA031521 | 1B (VP2) | 747 | 1512 | 0 | 0 | 766 | |
| SQA031522 | 1C (VP3) | 1513 | 2246 | 0 | 0 | 734 | |
| SQA031523 | 1D (VP1) | 2247 | 3113 | 0 | 0 | 867 | |
| SQA031524 | 2A (P2-A) | 3114 | 3542 | 0 | 0 | 429 | |
| SQA031525 | 2B (P2-B) | 3543 | 3827 | 0 | 0 | 285 | |
| SQA031526 | 2C (P2-C) | 3828 | 4790 | 0 | 0 | 963 | |
| SQA031527 | 3'UTR | 7017 | 7038 | 0 | 1 | 22 | |
| SQA031528 | 3A (P3-A) | 4791 | 5024 | 0 | 0 | 234 | |
| SQA031529 | 3B (VPg) | 5025 | 5087 | 0 | 0 | 63 | |
| SQA031530 | protease 3C | 5088 | 5636 | 0 | 0 | 549 | |
| SQA031531 | 3D | 5637 | 7013 | 0 | 0 | 1377 | |
| SQA031532 | 5'UTR | 1 | 539 | 1 | 0 | 539 | |
| SQA031533 | CDS | 540 | 7016 | 0 | 0 | 6477 | |
| SQA031534 | VP4/2 | 540 | 974 | 0 | 0 | 435 | |
| SQA031535 | genome | 1 | 7038 | 1 | 1 | 7038 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA029449 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA029450 | 3D | 1700 | 2158 | 0 | 0 | 459 | |
| SPA029451 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 | |
| SPA029452 | 3A (P3-A) | 1418 | 1495 | 0 | 0 | 78 | |
| SPA029453 | 2C (P2-C) | 1097 | 1417 | 0 | 0 | 321 | |
| SPA029454 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA029455 | 2A (P2-A) | 859 | 1001 | 0 | 0 | 143 | |
| SPA029456 | 1D (VP1) | 570 | 858 | 0 | 0 | 289 | |
| SPA029457 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA029458 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA029459 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA029460 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA029461 | CDS | 1 | 2158 | 0 | 0 | 2158 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |