RVdb StrainID | ANZ00016 | GenBank Accession | ON729332.1 |
Species | RVA | Sequence Length | 6928 nt |
Serotype | 11 Checked by RVdb | Serotype (GenBank) | 11 |
Definition | Rhinovirus A11 strain SC330 polyprotein gene, partial cds | GenBank Submission Date | 2022-07-20 |
Strain Name | SC330 | Sampling Date | 2017 |
Sampling Country | USA | Sampling location | Seattle, Washington |
Isolation Source | -N/A- | NCBI Taxon ID | 39767 |
Sequencing Technology | -N/A- | Assembly Method | -N/A- |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SQA031285 | 1A (VP4) | 573 | 779 | 0 | 0 | 207 | |
SQA031286 | 1B (VP2) | 780 | 1559 | 0 | 0 | 780 | |
SQA031287 | 1C (VP3) | 1560 | 2273 | 0 | 0 | 714 | |
SQA031288 | 1D (VP1) | 2274 | 3131 | 0 | 0 | 858 | |
SQA031289 | 2A (P2-A) | 3132 | 3557 | 0 | 0 | 426 | |
SQA031290 | 2B (P2-B) | 3558 | 3842 | 0 | 0 | 285 | |
SQA031291 | 2C (P2-C) | 3843 | 4808 | 0 | 0 | 966 | |
SQA031292 | 3A (P3-A) | 4809 | 5039 | 0 | 0 | 231 | |
SQA031293 | 3B (VPg) | 5040 | 5102 | 0 | 0 | 63 | |
SQA031294 | protease 3C | 5103 | 5651 | 0 | 0 | 549 | |
SQA031295 | 3D | 5652 | 6928 | 0 | 1 | 1277 | |
SQA031296 | 5'UTR | 1 | 572 | 1 | 0 | 572 | |
SQA031297 | CDS | 573 | 6928 | 0 | 1 | 6356 | |
SQA031298 | VP4/2 | 573 | 1007 | 0 | 0 | 435 |
SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
---|---|---|---|---|---|---|---|
SPA030421 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
SPA030422 | 3D | 1694 | 2118 | 0 | 1 | 425 | |
SPA030423 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 | |
SPA030424 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
SPA030425 | 2C (P2-C) | 1091 | 1412 | 0 | 0 | 322 | |
SPA030426 | 2B (P2-B) | 996 | 1090 | 0 | 0 | 95 | |
SPA030427 | 2A (P2-A) | 854 | 995 | 0 | 0 | 142 | |
SPA030428 | 1D (VP1) | 568 | 853 | 0 | 0 | 286 | |
SPA030429 | 1C (VP3) | 330 | 567 | 0 | 0 | 238 | |
SPA030430 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
SPA030431 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
SPA030432 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
SPA030433 | CDS | 1 | 2118 | 0 | 0 | 2118 |
PMID | Title | Publication Year | Journal | View in RVdb |
---|---|---|---|---|
35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |