| RVdb StrainID | ANZ00011 | GenBank Accession | ON729338.1 |
| Species | RVA | Sequence Length | 7079 nt |
| Serotype | 59 Checked by RVdb | Serotype (GenBank) | 59 |
| Definition | Rhinovirus A59 strain SC1090, complete genome | GenBank Submission Date | 2022-07-20 |
| Strain Name | SC1090 | Sampling Date | 2017 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 185918 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA031270 | 1A (VP4) | 591 | 797 | 0 | 0 | 207 | |
| SQA031271 | 1B (VP2) | 798 | 1592 | 0 | 0 | 795 | |
| SQA031272 | 1C (VP3) | 1593 | 2306 | 0 | 0 | 714 | |
| SQA031273 | 1D (VP1) | 2307 | 3164 | 0 | 0 | 858 | |
| SQA031274 | 2A (P2-A) | 3165 | 3590 | 0 | 0 | 426 | |
| SQA031275 | 2B (P2-B) | 3591 | 3875 | 0 | 0 | 285 | |
| SQA031276 | 2C (P2-C) | 3876 | 4841 | 0 | 0 | 966 | |
| SQA031277 | 3A (P3-A) | 4842 | 5072 | 0 | 0 | 231 | |
| SQA031278 | 3B (VPg) | 5073 | 5135 | 0 | 0 | 63 | |
| SQA031279 | protease 3C | 5136 | 5684 | 0 | 0 | 549 | |
| SQA031280 | 3D | 5685 | 7064 | 0 | 0 | 1380 | |
| SQA031281 | 5'UTR | 1 | 590 | 1 | 0 | 590 | |
| SQA031282 | CDS | 591 | 7067 | 0 | 0 | 6477 | |
| SQA031283 | VP4/2 | 591 | 1025 | 0 | 0 | 435 | |
| SQA031284 | genome | 1 | 7079 | 1 | 1 | 7079 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA030486 | protease 3C | 1516 | 1698 | 0 | 0 | 183 | |
| SPA030487 | 3D | 1699 | 2154 | 0 | 0 | 456 | |
| SPA030488 | 3B (VPg) | 1495 | 1515 | 0 | 0 | 21 | |
| SPA030489 | 3A (P3-A) | 1418 | 1494 | 0 | 0 | 77 | |
| SPA030490 | 2C (P2-C) | 1096 | 1417 | 0 | 0 | 322 | |
| SPA030491 | 2B (P2-B) | 1001 | 1095 | 0 | 0 | 95 | |
| SPA030492 | 2A (P2-A) | 859 | 1000 | 0 | 0 | 142 | |
| SPA030493 | 1D (VP1) | 573 | 858 | 0 | 0 | 286 | |
| SPA030494 | 1C (VP3) | 335 | 572 | 0 | 0 | 238 | |
| SPA030495 | 1B (VP2) | 70 | 334 | 0 | 0 | 265 | |
| SPA030496 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA030497 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA030498 | CDS | 1 | 2158 | 0 | 0 | 2158 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |