| RVdb StrainID | ANS10299 | GenBank Accession | OQ842402.1 |
| Species | RVA | Sequence Length | 7163 nt |
| Serotype | 1 Checked by RVdb | Serotype (GenBank) | 1 |
| Definition | Rhinovirus A1 isolate RV-A1/USA/6P3/2010, complete genome | GenBank Submission Date | 2023-05-16 |
| Strain Name | RV-A1/USA/6P3/2010 | Sampling Date | 2010-08 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 573824 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA041257 | 3'UTR | 7126 | 7162 | 0 | 0 | 37 | |
| SQA041258 | 5'UTR | 17 | 651 | 0 | 0 | 635 | |
| SQA041259 | CDS | 652 | 7125 | 0 | 0 | 6474 | |
| SQA041260 | VP4/2 | 652 | 1086 | 0 | 0 | 435 | |
| SQA041261 | 3D | 5743 | 7122 | 0 | 0 | 1380 | |
| SQA041262 | 2C (P2-C) | 3934 | 4899 | 0 | 0 | 966 | |
| SQA041263 | 1D (VP1) | 2362 | 3222 | 0 | 0 | 861 | |
| SQA041264 | 1B (VP2) | 859 | 1647 | 0 | 0 | 789 | |
| SQA041265 | 1C (VP3) | 1648 | 2361 | 0 | 0 | 714 | |
| SQA041266 | protease 3C | 5194 | 5742 | 0 | 0 | 549 | |
| SQA041267 | 2A (P2-A) | 3223 | 3648 | 0 | 0 | 426 | |
| SQA041268 | 2B (P2-B) | 3649 | 3933 | 0 | 0 | 285 | |
| SQA041269 | 3A (P3-A) | 4900 | 5130 | 0 | 0 | 231 | |
| SQA041270 | 1A (VP4) | 652 | 858 | 0 | 0 | 207 | |
| SQA041271 | 3B (VPg) | 5131 | 5193 | 0 | 0 | 63 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA033816 | CDS | 1 | 2157 | 0 | 0 | 2157 | |
| SPA033890 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA034390 | 3D | 1698 | 2157 | 0 | 0 | 460 | |
| SPA034391 | 2C (P2-C) | 1095 | 1416 | 0 | 0 | 322 | |
| SPA034392 | 1D (VP1) | 571 | 857 | 0 | 0 | 287 | |
| SPA034393 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA034394 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA034395 | protease 3C | 1515 | 1697 | 0 | 0 | 183 | |
| SPA034396 | 2A (P2-A) | 858 | 999 | 0 | 0 | 142 | |
| SPA034397 | 2B (P2-B) | 1000 | 1094 | 0 | 0 | 95 | |
| SPA034398 | 3A (P3-A) | 1417 | 1493 | 0 | 0 | 77 | |
| SPA034399 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA034400 | 3B (VPg) | 1494 | 1514 | 0 | 0 | 21 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |