| RVdb StrainID | ANS10298 | GenBank Accession | OQ791565.1 |
| Species | RVA | Sequence Length | 7146 nt |
| Serotype | 1 Checked by RVdb | Serotype (GenBank) | 1 |
| Definition | Rhinovirus A1 isolate RV-A1/USA/12J7/2015, complete genome | GenBank Submission Date | 2023-05-09 |
| Strain Name | RV-A1/USA/12J7/2015 | Sampling Date | 2015-09 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 573824 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA041242 | 3'UTR | 7110 | 7146 | 0 | 0 | 37 | |
| SQA041243 | 5'UTR | 1 | 635 | 0 | 0 | 635 | |
| SQA041244 | CDS | 636 | 7109 | 0 | 0 | 6474 | |
| SQA041245 | VP4/2 | 636 | 1070 | 0 | 0 | 435 | |
| SQA041246 | 3D | 5727 | 7106 | 0 | 0 | 1380 | |
| SQA041247 | 2C (P2-C) | 3918 | 4883 | 0 | 0 | 966 | |
| SQA041248 | 1D (VP1) | 2346 | 3206 | 0 | 0 | 861 | |
| SQA041249 | 1B (VP2) | 843 | 1631 | 0 | 0 | 789 | |
| SQA041250 | 1C (VP3) | 1632 | 2345 | 0 | 0 | 714 | |
| SQA041251 | protease 3C | 5178 | 5726 | 0 | 0 | 549 | |
| SQA041252 | 2A (P2-A) | 3207 | 3632 | 0 | 0 | 426 | |
| SQA041253 | 2B (P2-B) | 3633 | 3917 | 0 | 0 | 285 | |
| SQA041254 | 3A (P3-A) | 4884 | 5114 | 0 | 0 | 231 | |
| SQA041255 | 1A (VP4) | 636 | 842 | 0 | 0 | 207 | |
| SQA041256 | 3B (VPg) | 5115 | 5177 | 0 | 0 | 63 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA033817 | CDS | 1 | 2157 | 0 | 0 | 2157 | |
| SPA033891 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA034401 | 3D | 1698 | 2157 | 0 | 0 | 460 | |
| SPA034402 | 2C (P2-C) | 1095 | 1416 | 0 | 0 | 322 | |
| SPA034403 | 1D (VP1) | 571 | 857 | 0 | 0 | 287 | |
| SPA034404 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA034405 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPA034406 | protease 3C | 1515 | 1697 | 0 | 0 | 183 | |
| SPA034407 | 2A (P2-A) | 858 | 999 | 0 | 0 | 142 | |
| SPA034408 | 2B (P2-B) | 1000 | 1094 | 0 | 0 | 95 | |
| SPA034409 | 3A (P3-A) | 1417 | 1493 | 0 | 0 | 77 | |
| SPA034410 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA034411 | 3B (VPg) | 1494 | 1514 | 0 | 0 | 21 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |