| RVdb StrainID | ANS10297 | GenBank Accession | OQ791522.1 |
| Species | RVA | Sequence Length | 7113 nt |
| Serotype | 1 Checked by RVdb | Serotype (GenBank) | 1 |
| Definition | Rhinovirus A1 isolate RV-A1/USA/4T4/2009, complete genome | GenBank Submission Date | 2023-05-09 |
| Strain Name | RV-A1/USA/4T4/2009 | Sampling Date | 2009-10 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 573824 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA041227 | 3'UTR | 7075 | 7111 | 0 | 0 | 37 | |
| SQA041228 | 5'UTR | 1 | 603 | 1 | 0 | 603 | |
| SQA041229 | CDS | 604 | 7074 | 0 | 0 | 6471 | |
| SQA041230 | VP4/2 | 604 | 1038 | 0 | 0 | 435 | |
| SQA041231 | 3D | 5692 | 7071 | 0 | 0 | 1380 | |
| SQA041232 | 2C (P2-C) | 3883 | 4848 | 0 | 0 | 966 | |
| SQA041233 | 1D (VP1) | 2311 | 3171 | 0 | 0 | 861 | |
| SQA041234 | 1B (VP2) | 811 | 1599 | 0 | 0 | 789 | |
| SQA041235 | 1C (VP3) | 1600 | 2310 | 0 | 0 | 711 | |
| SQA041236 | protease 3C | 5143 | 5691 | 0 | 0 | 549 | |
| SQA041237 | 2A (P2-A) | 3172 | 3597 | 0 | 0 | 426 | |
| SQA041238 | 2B (P2-B) | 3598 | 3882 | 0 | 0 | 285 | |
| SQA041239 | 3A (P3-A) | 4849 | 5079 | 0 | 0 | 231 | |
| SQA041240 | 1A (VP4) | 604 | 810 | 0 | 0 | 207 | |
| SQA041241 | 3B (VPg) | 5080 | 5142 | 0 | 0 | 63 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA033819 | CDS | 1 | 2156 | 0 | 0 | 2156 | |
| SPA033893 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA034423 | 3D | 1697 | 2156 | 0 | 0 | 460 | |
| SPA034424 | 2C (P2-C) | 1094 | 1415 | 0 | 0 | 322 | |
| SPA034425 | 1D (VP1) | 570 | 856 | 0 | 0 | 287 | |
| SPA034426 | 1B (VP2) | 70 | 332 | 0 | 0 | 263 | |
| SPA034427 | 1C (VP3) | 333 | 569 | 0 | 0 | 237 | |
| SPA034428 | protease 3C | 1514 | 1696 | 0 | 0 | 183 | |
| SPA034429 | 2A (P2-A) | 857 | 998 | 0 | 0 | 142 | |
| SPA034430 | 2B (P2-B) | 999 | 1093 | 0 | 0 | 95 | |
| SPA034431 | 3A (P3-A) | 1416 | 1492 | 0 | 0 | 77 | |
| SPA034432 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA034433 | 3B (VPg) | 1493 | 1513 | 0 | 0 | 21 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |