| RVdb StrainID | ANS10296 | GenBank Accession | OQ791521.1 |
| Species | RVA | Sequence Length | 7124 nt |
| Serotype | 31 Checked by RVdb | Serotype (GenBank) | 31 |
| Definition | Rhinovirus A31 isolate RV-A31/USA/4T3/2009, complete genome | GenBank Submission Date | 2023-05-09 |
| Strain Name | RV-A31/USA/4T3/2009 | Sampling Date | 2009-10 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 185902 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA041212 | 3'UTR | 7091 | 7124 | 0 | 1 | 34 | |
| SQA041213 | 5'UTR | 1 | 610 | 1 | 0 | 610 | |
| SQA041214 | CDS | 611 | 7090 | 0 | 0 | 6480 | |
| SQA041215 | VP4/2 | 611 | 1045 | 0 | 0 | 435 | |
| SQA041216 | 3D | 5708 | 7087 | 0 | 0 | 1380 | |
| SQA041217 | 2C (P2-C) | 3899 | 4864 | 0 | 0 | 966 | |
| SQA041218 | 1D (VP1) | 2333 | 3187 | 0 | 0 | 855 | |
| SQA041219 | 1B (VP2) | 818 | 1618 | 0 | 0 | 801 | |
| SQA041220 | 1C (VP3) | 1619 | 2332 | 0 | 0 | 714 | |
| SQA041221 | protease 3C | 5159 | 5707 | 0 | 0 | 549 | |
| SQA041222 | 2A (P2-A) | 3188 | 3613 | 0 | 0 | 426 | |
| SQA041223 | 2B (P2-B) | 3614 | 3898 | 0 | 0 | 285 | |
| SQA041224 | 3A (P3-A) | 4865 | 5095 | 0 | 0 | 231 | |
| SQA041225 | 1A (VP4) | 611 | 817 | 0 | 0 | 207 | |
| SQA041226 | 3B (VPg) | 5096 | 5158 | 0 | 0 | 63 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA033802 | CDS | 1 | 2159 | 0 | 0 | 2159 | |
| SPA033876 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA034236 | 3D | 1700 | 2159 | 0 | 0 | 460 | |
| SPA034237 | 2C (P2-C) | 1097 | 1418 | 0 | 0 | 322 | |
| SPA034238 | 1D (VP1) | 575 | 859 | 0 | 0 | 285 | |
| SPA034239 | 1B (VP2) | 70 | 336 | 0 | 0 | 267 | |
| SPA034240 | 1C (VP3) | 337 | 574 | 0 | 0 | 238 | |
| SPA034241 | protease 3C | 1517 | 1699 | 0 | 0 | 183 | |
| SPA034242 | 2A (P2-A) | 860 | 1001 | 0 | 0 | 142 | |
| SPA034243 | 2B (P2-B) | 1002 | 1096 | 0 | 0 | 95 | |
| SPA034244 | 3A (P3-A) | 1419 | 1495 | 0 | 0 | 77 | |
| SPA034245 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA034246 | 3B (VPg) | 1496 | 1516 | 0 | 0 | 21 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |