| RVdb StrainID | ANS10110 | GenBank Accession | OP342712.1 |
| Species | RVA | Sequence Length | 6846 nt |
| Serotype | 80 Checked by RVdb | Serotype (GenBank) | 80 |
| Definition | Rhinovirus A80 strain RVA80/China/2017/BJP31 polyprotein gene, partial cds | GenBank Submission Date | 2022-12-13 |
| Strain Name | RVA80/China/2017/BJP31 | Sampling Date | 2017-04-10 |
| Sampling Country | China | Sampling location | Beijing |
| Isolation Source | -N/A- | NCBI Taxon ID | 185934 |
| Sequencing Technology | Illumina | Assembly Method | Geneious Prime v. 2022.1.1 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA040244 | 5'UTR | 1 | 513 | 1 | 0 | 513 | |
| SQA040245 | CDS | 514 | 6846 | 0 | 1 | 6333 | |
| SQA040246 | VP4/2 | 514 | 948 | 0 | 0 | 435 | |
| SQA040247 | 3D | 5617 | 6846 | 0 | 1 | 1230 | |
| SQA040248 | 2C (P2-C) | 3811 | 4773 | 0 | 0 | 963 | |
| SQA040249 | 1D (VP1) | 2221 | 3096 | 0 | 0 | 876 | |
| SQA040250 | 1B (VP2) | 721 | 1506 | 0 | 0 | 786 | |
| SQA040251 | 1C (VP3) | 1507 | 2220 | 0 | 0 | 714 | |
| SQA040252 | protease 3C | 5068 | 5616 | 0 | 0 | 549 | |
| SQA040253 | 2A (P2-A) | 3097 | 3525 | 0 | 0 | 429 | |
| SQA040254 | 2B (P2-B) | 3526 | 3810 | 0 | 0 | 285 | |
| SQA040255 | 3A (P3-A) | 4774 | 5004 | 0 | 0 | 231 | |
| SQA040256 | 1A (VP4) | 514 | 720 | 0 | 0 | 207 | |
| SQA040257 | 3B (VPg) | 5005 | 5067 | 0 | 0 | 63 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA033845 | CDS | 1 | 2111 | 0 | 0 | 2111 | |
| SPA033919 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA034709 | 3D | 1702 | 2111 | 0 | 1 | 410 | |
| SPA034710 | 2C (P2-C) | 1100 | 1420 | 0 | 0 | 321 | |
| SPA034711 | 1D (VP1) | 570 | 861 | 0 | 0 | 292 | |
| SPA034712 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA034713 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA034714 | protease 3C | 1519 | 1701 | 0 | 0 | 183 | |
| SPA034715 | 2A (P2-A) | 862 | 1004 | 0 | 0 | 143 | |
| SPA034716 | 2B (P2-B) | 1005 | 1099 | 0 | 0 | 95 | |
| SPA034717 | 3A (P3-A) | 1421 | 1497 | 0 | 0 | 77 | |
| SPA034718 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA034719 | 3B (VPg) | 1498 | 1518 | 0 | 0 | 21 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 37733296 | Genetic diversity and characterization of rhinoviruses from Chinese clinical samples with a global perspective. | 2023 | Microbiol Spectr | View More |