| RVdb StrainID | ANS00088 | GenBank Accession | ON311207.1 |
| Species | RVA | Sequence Length | 7141 nt |
| Serotype | 100 Checked by RVdb | Serotype (GenBank) | 100 |
| Definition | Rhinovirus A100 strain A100_1 polyprotein gene, complete cds | GenBank Submission Date | 2022-07-19 |
| Strain Name | A100_1 | Sampling Date | 2019-10-12 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 185946 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA023765 | 1A (VP4) | 613 | 819 | 0 | 0 | 207 | |
| SQA023766 | 1B (VP2) | 820 | 1614 | 0 | 0 | 795 | |
| SQA023767 | 1C (VP3) | 1615 | 2328 | 0 | 0 | 714 | |
| SQA023768 | 1D (VP1) | 2329 | 3192 | 0 | 0 | 864 | |
| SQA023769 | 2A (P2-A) | 3193 | 3618 | 0 | 0 | 426 | |
| SQA023770 | 2B (P2-B) | 3619 | 3903 | 0 | 0 | 285 | |
| SQA023771 | 2C (P2-C) | 3904 | 4869 | 0 | 0 | 966 | |
| SQA023772 | 3'UTR | 7096 | 7141 | 0 | 1 | 46 | |
| SQA023773 | 3A (P3-A) | 4870 | 5100 | 0 | 0 | 231 | |
| SQA023774 | 3B (VPg) | 5101 | 5163 | 0 | 0 | 63 | |
| SQA023775 | protease 3C | 5164 | 5712 | 0 | 0 | 549 | |
| SQA023776 | 3D | 5713 | 7092 | 0 | 0 | 1380 | |
| SQA023777 | 5'UTR | 1 | 612 | 0 | 0 | 612 | |
| SQA023778 | CDS | 613 | 7095 | 0 | 0 | 6483 | |
| SQA023779 | VP4/2 | 613 | 1047 | 0 | 0 | 435 | |
| SQA023780 | genome | 1 | 7141 | 0 | 1 | 7141 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA029488 | protease 3C | 1518 | 1700 | 0 | 0 | 183 | |
| SPA029489 | 3D | 1701 | 2148 | 0 | 0 | 448 | |
| SPA029490 | 3B (VPg) | 1497 | 1517 | 0 | 0 | 21 | |
| SPA029491 | 3A (P3-A) | 1420 | 1496 | 0 | 0 | 77 | |
| SPA029492 | 2C (P2-C) | 1098 | 1419 | 0 | 0 | 322 | |
| SPA029493 | 2B (P2-B) | 1003 | 1097 | 0 | 0 | 95 | |
| SPA029494 | 2A (P2-A) | 861 | 1002 | 0 | 0 | 142 | |
| SPA029495 | 1D (VP1) | 573 | 860 | 0 | 0 | 288 | |
| SPA029496 | 1C (VP3) | 335 | 572 | 0 | 0 | 238 | |
| SPA029497 | 1B (VP2) | 70 | 334 | 0 | 0 | 265 | |
| SPA029498 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA029499 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA029500 | CDS | 1 | 2160 | 0 | 0 | 2160 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |