| RVdb StrainID | ANS00078 | GenBank Accession | ON311217.1 |
| Species | RVA | Sequence Length | 7056 nt |
| Serotype | 45 Checked by RVdb | Serotype (GenBank) | 45 |
| Definition | Rhinovirus A45 strain A45_1 polyprotein gene, complete cds | GenBank Submission Date | 2022-07-19 |
| Strain Name | A45_1 | Sampling Date | 2020-01-21 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 147676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA023734 | 1A (VP4) | 571 | 777 | 0 | 0 | 207 | |
| SQA023735 | 1B (VP2) | 778 | 1557 | 0 | 0 | 780 | |
| SQA023736 | 1C (VP3) | 1558 | 2271 | 0 | 0 | 714 | |
| SQA023737 | 1D (VP1) | 2272 | 3120 | 0 | 0 | 849 | |
| SQA023738 | 2A (P2-A) | 3121 | 3555 | 0 | 0 | 435 | |
| SQA023739 | 2B (P2-B) | 3556 | 3840 | 0 | 0 | 285 | |
| SQA023740 | 2C (P2-C) | 3841 | 4803 | 0 | 0 | 963 | |
| SQA023741 | 3A (P3-A) | 4804 | 5034 | 0 | 0 | 231 | |
| SQA023742 | 3B (VPg) | 5035 | 5097 | 0 | 0 | 63 | |
| SQA023743 | protease 3C | 5098 | 5646 | 0 | 0 | 549 | |
| SQA023744 | 3D | 5647 | 7026 | 0 | 0 | 1380 | |
| SQA023745 | 5'UTR | 1 | 570 | 1 | 0 | 570 | |
| SQA023746 | CDS | 571 | 7029 | 0 | 0 | 6459 | |
| SQA023747 | VP4/2 | 571 | 1005 | 0 | 0 | 435 | |
| SQA023748 | genome | 1 | 7056 | 1 | 1 | 7056 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA029618 | protease 3C | 1510 | 1692 | 0 | 0 | 183 | |
| SPA029619 | 3D | 1693 | 2152 | 0 | 0 | 460 | |
| SPA029620 | 3B (VPg) | 1489 | 1509 | 0 | 0 | 21 | |
| SPA029621 | 3A (P3-A) | 1412 | 1488 | 0 | 0 | 77 | |
| SPA029622 | 2C (P2-C) | 1091 | 1411 | 0 | 0 | 321 | |
| SPA029623 | 2B (P2-B) | 996 | 1090 | 0 | 0 | 95 | |
| SPA029624 | 2A (P2-A) | 852 | 995 | 0 | 0 | 144 | |
| SPA029625 | 1C (VP3) | 330 | 567 | 0 | 0 | 238 | |
| SPA029626 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPA029627 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA029628 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA029629 | CDS | 1 | 2152 | 0 | 0 | 2152 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |