| RVdb StrainID | ANS00033 | GenBank Accession | ON311262.1 |
| Species | RVA | Sequence Length | 7081 nt |
| Serotype | 11 Checked by RVdb | Serotype (GenBank) | 11 |
| Definition | Rhinovirus A11 strain A11_2 polyprotein gene, complete cds | GenBank Submission Date | 2022-07-19 |
| Strain Name | A11_2 | Sampling Date | 2020-11-09 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 39767 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA023591 | 1A (VP4) | 595 | 801 | 0 | 0 | 207 | |
| SQA023592 | 1B (VP2) | 802 | 1581 | 0 | 0 | 780 | |
| SQA023593 | 1C (VP3) | 1582 | 2295 | 0 | 0 | 714 | |
| SQA023594 | 1D (VP1) | 2296 | 3153 | 0 | 0 | 858 | |
| SQA023595 | 2A (P2-A) | 3154 | 3579 | 0 | 0 | 426 | |
| SQA023596 | 2B (P2-B) | 3580 | 3864 | 0 | 0 | 285 | |
| SQA023597 | 2C (P2-C) | 3865 | 4830 | 0 | 0 | 966 | |
| SQA023598 | 3'UTR | 7057 | 7081 | 0 | 1 | 25 | |
| SQA023599 | 3A (P3-A) | 4831 | 5061 | 0 | 0 | 231 | |
| SQA023600 | 3B (VPg) | 5062 | 5124 | 0 | 0 | 63 | |
| SQA023601 | protease 3C | 5125 | 5673 | 0 | 0 | 549 | |
| SQA023602 | 3D | 5674 | 7053 | 0 | 0 | 1380 | |
| SQA023603 | 5'UTR | 1 | 594 | 1 | 0 | 594 | |
| SQA023604 | CDS | 595 | 7056 | 0 | 0 | 6462 | |
| SQA023605 | VP4/2 | 595 | 1029 | 0 | 0 | 435 | |
| SQA023606 | genome | 1 | 7081 | 1 | 1 | 7081 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA030200 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPA030201 | 3D | 1694 | 2149 | 0 | 0 | 456 | |
| SPA030202 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 | |
| SPA030203 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
| SPA030204 | 2C (P2-C) | 1091 | 1412 | 0 | 0 | 322 | |
| SPA030205 | 2B (P2-B) | 996 | 1090 | 0 | 0 | 95 | |
| SPA030206 | 2A (P2-A) | 854 | 995 | 0 | 0 | 142 | |
| SPA030207 | 1D (VP1) | 568 | 853 | 0 | 0 | 286 | |
| SPA030208 | 1C (VP3) | 330 | 567 | 0 | 0 | 238 | |
| SPA030209 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPA030210 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA030211 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA030212 | CDS | 1 | 2153 | 0 | 0 | 2153 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |